Variant report

Variant	rs56951565
Chromosome Location	chr6:39487475-39487476
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39485932..39488385-chr6:39492203..39494440,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11961693	0.89[ASN][1000 genomes]
rs11964924	0.83[ASN][1000 genomes]
rs11968279	0.84[ASN][1000 genomes]
rs11968704	0.88[ASN][1000 genomes]
rs11969059	0.83[ASN][1000 genomes]
rs12525519	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12528130	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13213488	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1546910	0.86[ASN][1000 genomes]
rs16892194	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17457401	0.86[ASN][1000 genomes]
rs2073134	0.85[ASN][1000 genomes]
rs2235817	0.89[ASN][1000 genomes]
rs2273063	0.87[ASN][1000 genomes]
rs4446568	0.83[ASN][1000 genomes]
rs4482968	0.90[ASN][1000 genomes]
rs4482969	0.90[ASN][1000 genomes]
rs4605875	0.82[ASN][1000 genomes]
rs4714257	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57703896	0.87[ASN][1000 genomes]
rs58087685	0.86[ASN][1000 genomes]
rs59724542	0.85[ASN][1000 genomes]
rs6901155	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6928537	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6930913	0.81[ASN][1000 genomes]
rs73732127	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9357306	0.85[ASN][1000 genomes]
rs9357308	0.89[ASN][1000 genomes]
rs9357309	0.90[ASN][1000 genomes]
rs9367009	0.81[ASN][1000 genomes]
rs9367012	0.88[ASN][1000 genomes]
rs9367014	0.85[ASN][1000 genomes]
rs9367016	0.90[ASN][1000 genomes]
rs9369123	0.87[ASN][1000 genomes]
rs9369124	0.85[ASN][1000 genomes]
rs9380871	0.89[ASN][1000 genomes]
rs9380872	0.89[ASN][1000 genomes]
rs9380873	0.89[ASN][1000 genomes]
rs9380874	0.86[ASN][1000 genomes]
rs9380875	0.80[ASN][1000 genomes]
rs9380876	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9380880	0.80[ASN][1000 genomes]
rs9394600	0.81[ASN][1000 genomes]
rs9394601	0.89[ASN][1000 genomes]
rs9394602	0.90[ASN][1000 genomes]
rs9394603	0.90[ASN][1000 genomes]
rs9394606	0.87[ASN][1000 genomes]
rs9394607	0.81[ASN][1000 genomes]
rs9394611	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39481200-39489800	Weak transcription	Pancreas	Pancrea
2	chr6:39485000-39493200	Enhancers	Fetal Lung	lung
3	chr6:39486200-39488000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:39486200-39488200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:39486200-39488200	Weak transcription	NHDF-Ad	bronchial
6	chr6:39486200-39488400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:39486200-39498200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:39487400-39492800	Enhancers	Fetal Stomach	stomach

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