Variant report

Variant	rs4714257
Chromosome Location	chr6:39524766-39524767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39523800..39525547-chr6:39619061..39621727,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10484823	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11758868	0.96[YRI][hapmap]
rs1328387	0.95[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs1520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2092524	0.95[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs34081723	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35516457	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4714258	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4714260	0.96[ASN][1000 genomes]
rs4714261	0.93[YRI][hapmap];0.90[AMR][1000 genomes]
rs4714262	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs56951565	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6458117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6458119	0.86[AMR][1000 genomes]
rs6901155	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6905995	0.81[YRI][hapmap];0.88[AMR][1000 genomes]
rs6907077	0.90[ASN][1000 genomes]
rs6911091	0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs6913556	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6928537	0.81[AMR][1000 genomes]
rs6935113	0.98[ASN][1000 genomes]
rs73732127	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73732138	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73732153	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7751706	0.86[AMR][1000 genomes]
rs9296301	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9369128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9380876	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9471123	0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9471124	0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9471128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9471129	0.93[YRI][hapmap];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39516800-39528800	Weak transcription	Ovary	ovary
2	chr6:39518200-39528000	Weak transcription	Fetal Stomach	stomach
3	chr6:39522200-39527800	Weak transcription	Right Atrium	heart
4	chr6:39522400-39526400	Weak transcription	NHDF-Ad	bronchial
5	chr6:39522800-39526000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:39523200-39535800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:39524400-39527800	Weak transcription	Fetal Lung	lung

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