Variant report

Variant	rs11758868
Chromosome Location	chr6:39528952-39528953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10484823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947815	0.85[CEU][hapmap]
rs11751690	0.82[JPT][hapmap]
rs11751847	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs11752175	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs11754808	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs11755434	0.95[EUR][1000 genomes]
rs11757080	0.95[EUR][1000 genomes]
rs11759743	0.94[EUR][1000 genomes]
rs12525519	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12525874	0.82[JPT][hapmap]
rs12528130	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13200342	0.95[EUR][1000 genomes]
rs13209820	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213322	0.95[EUR][1000 genomes]
rs13213488	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1536700	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs16892194	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34081723	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34720944	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35516457	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714257	0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4714258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55749620	0.95[EUR][1000 genomes]
rs56713174	0.93[EUR][1000 genomes]
rs6458119	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901155	0.80[AMR][1000 genomes]
rs6905995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6913556	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927837	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs6928195	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs6928537	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6942056	0.89[EUR][1000 genomes]
rs71571377	0.90[EUR][1000 genomes]
rs73732127	0.80[AMR][1000 genomes]
rs73732138	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73732153	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751353	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751706	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7751942	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs7754249	0.90[EUR][1000 genomes]
rs7771470	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs7774528	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs9296301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380876	0.82[AMR][1000 genomes]
rs9471123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39523200-39535800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:39526400-39529600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:39527200-39533200	Weak transcription	NHDF-Ad	bronchial
4	chr6:39527800-39530400	Enhancers	Fetal Lung	lung
5	chr6:39528000-39530400	Enhancers	Fetal Stomach	stomach
6	chr6:39528600-39529000	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:39528600-39545400	Weak transcription	Brain Anterior Caudate	brain
8	chr6:39528800-39529000	Enhancers	Right Atrium	heart
9	chr6:39528800-39529800	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links