Variant report

Variant	rs7751353
Chromosome Location	chr6:39523281-39523282
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10484823	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947815	0.92[CEU][hapmap]
rs11751690	0.82[JPT][hapmap]
rs11751847	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs11752175	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11754808	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11755434	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11757080	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11758868	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11759743	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12525519	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs12525874	0.82[JPT][hapmap]
rs12528130	0.90[CEU][hapmap];0.95[EUR][1000 genomes]
rs13200342	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13209820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213322	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13213488	0.95[EUR][1000 genomes]
rs1536700	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs16892194	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs34081723	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34720944	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35516457	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714258	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714261	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55749620	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56713174	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6458119	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905995	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6913556	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927837	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6928195	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6928537	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs6942056	0.92[EUR][1000 genomes]
rs71571377	0.93[EUR][1000 genomes]
rs73732138	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73732153	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751706	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7751942	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7754249	0.93[EUR][1000 genomes]
rs7771470	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7774528	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9296301	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471123	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471124	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471129	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39516800-39528800	Weak transcription	Ovary	ovary
2	chr6:39518200-39528000	Weak transcription	Fetal Stomach	stomach
3	chr6:39521000-39523400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:39521600-39523400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:39521800-39524200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:39522200-39524000	Weak transcription	Fetal Lung	lung
7	chr6:39522200-39527800	Weak transcription	Right Atrium	heart
8	chr6:39522400-39526400	Weak transcription	NHDF-Ad	bronchial
9	chr6:39522800-39526000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:39523000-39524000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:39523200-39523400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:39523200-39523400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:39523200-39523400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:39523200-39535800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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