Variant report

Variant	rs11751847
Chromosome Location	chr6:39462421-39462422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39451685..39454095-chr6:39459914..39462722,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10484823	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs10947815	1.00[CEU][hapmap]
rs11752175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752438	0.82[ASN][1000 genomes]
rs11754807	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11754808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755434	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757080	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758868	0.85[CEU][hapmap]
rs11759743	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525519	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528130	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200342	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209820	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs13213322	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213488	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892194	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34081723	0.89[EUR][1000 genomes]
rs34720944	0.93[EUR][1000 genomes]
rs35516457	0.89[EUR][1000 genomes]
rs4714258	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs4714261	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs55749620	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56713174	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458116	1.00[JPT][hapmap]
rs6458119	0.87[EUR][1000 genomes]
rs6905995	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs6913556	0.89[EUR][1000 genomes]
rs6927837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928195	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928537	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942056	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571377	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73732138	0.90[EUR][1000 genomes]
rs73732153	0.89[EUR][1000 genomes]
rs7751353	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs7751706	0.87[EUR][1000 genomes]
rs7751942	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754249	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771470	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774528	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296301	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs9471105	1.00[JPT][hapmap]
rs9471123	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs9471124	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs9471129	0.84[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39455200-39462800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:39455400-39465200	Weak transcription	Right Atrium	heart
3	chr6:39456800-39468400	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:39460400-39463200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:39461400-39462600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:39461600-39462600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:39461600-39463400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:39461600-39464200	Weak transcription	Adipose Nuclei	Adipose
9	chr6:39461600-39464600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:39461600-39464800	Weak transcription	NHDF-Ad	bronchial
11	chr6:39461800-39463000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:39461800-39463600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:39461800-39464800	Weak transcription	Placenta	Placenta
14	chr6:39461800-39465200	Weak transcription	Fetal Kidney	kidney
15	chr6:39462000-39462800	Weak transcription	Fetal Stomach	stomach
16	chr6:39462000-39464400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:39462000-39465000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:39462200-39462600	Weak transcription	Fetal Lung	lung
19	chr6:39462200-39463800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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