Variant report

Variant	rs7774528
Chromosome Location	chr6:39514978-39514979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39508684..39511349-chr6:39512535..39516562,4	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10484823	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs10947815	0.92[CEU][hapmap]
rs11751847	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752438	0.82[ASN][1000 genomes]
rs11754807	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11754808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755434	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757080	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758868	0.92[CEU][hapmap]
rs11759743	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525519	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528130	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13200342	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13209820	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13213322	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213488	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892194	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34081723	0.94[EUR][1000 genomes]
rs34720944	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35516457	0.94[EUR][1000 genomes]
rs4714258	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs4714261	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs55749620	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56713174	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458116	1.00[JPT][hapmap]
rs6458119	0.92[EUR][1000 genomes]
rs6901155	0.80[YRI][hapmap]
rs6905995	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs6913556	0.94[EUR][1000 genomes]
rs6927837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928537	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942056	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71571377	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73732138	0.95[EUR][1000 genomes]
rs73732153	0.94[EUR][1000 genomes]
rs7751353	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7751706	0.92[EUR][1000 genomes]
rs7751942	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754249	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296301	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs9471105	1.00[JPT][hapmap]
rs9471123	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs9471124	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs9471129	0.92[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39510000-39518200	Weak transcription	Brain Substantia Nigra	brain
2	chr6:39511200-39516000	Weak transcription	Right Atrium	heart
3	chr6:39511400-39518200	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:39512400-39516000	Weak transcription	Fetal Lung	lung
5	chr6:39512600-39517400	Weak transcription	Fetal Stomach	stomach
6	chr6:39512800-39521600	Weak transcription	Aorta	Aorta
7	chr6:39514200-39515000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links