Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:39383062..39385072-chr6:39481069..39483184,2	K562	blood:
2	chr6:39480617..39482416-chr6:39490454..39492302,2	K562	blood:
3	chr6:39463170..39464911-chr6:39479174..39481419,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11751847	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11752175	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11752438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754808	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11755434	0.82[ASN][1000 genomes]
rs11757080	0.82[ASN][1000 genomes]
rs11759743	0.82[ASN][1000 genomes]
rs12525519	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12528130	0.82[ASN][1000 genomes]
rs13200342	0.82[ASN][1000 genomes]
rs13213322	0.82[ASN][1000 genomes]
rs13213488	0.82[ASN][1000 genomes]
rs1536700	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs160019	0.82[CEU][hapmap];0.82[MEX][hapmap]
rs160020	0.82[MEX][hapmap]
rs16892194	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2446644	0.82[CEU][hapmap]
rs2446646	0.82[CEU][hapmap]
rs2499450	0.82[MEX][hapmap]
rs302563	0.82[CEU][hapmap];0.82[MEX][hapmap]
rs302567	0.82[CEU][hapmap]
rs302570	0.82[CEU][hapmap]
rs302572	0.82[CEU][hapmap];0.82[MEX][hapmap]
rs302588	0.82[MEX][hapmap]
rs302593	0.82[MEX][hapmap]
rs303678	0.82[MEX][hapmap]
rs55749620	0.82[ASN][1000 genomes]
rs56713174	0.82[ASN][1000 genomes]
rs6458116	1.00[JPT][hapmap]
rs6927837	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6928195	0.82[ASN][1000 genomes]
rs6928537	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6942056	0.82[ASN][1000 genomes]
rs71571377	0.82[ASN][1000 genomes]
rs7751942	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7754249	0.82[ASN][1000 genomes]
rs7771470	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7774528	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9471105	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39476600-39483200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:39476600-39486000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:39481000-39481200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:39481000-39481200	ZNF genes & repeats	Pancreas	Pancrea
5	chr6:39481000-39481600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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