Variant report

Variant	rs34720944
Chromosome Location	chr6:39521430-39521431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10484823	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11751847	0.93[EUR][1000 genomes]
rs11752175	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11754808	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11755434	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11757080	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11759743	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12525519	0.98[EUR][1000 genomes]
rs12528130	0.98[EUR][1000 genomes]
rs13200342	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13209820	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13213322	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13213488	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1536700	0.99[EUR][1000 genomes]
rs16892194	0.98[EUR][1000 genomes]
rs34081723	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35516457	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714258	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714261	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55749620	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56713174	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6458119	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6905995	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6913556	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6927837	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6928195	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6928537	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6942056	0.93[EUR][1000 genomes]
rs71571377	0.94[EUR][1000 genomes]
rs73732138	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73732153	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751353	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7751706	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7751942	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7754249	0.94[EUR][1000 genomes]
rs7771470	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7774528	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9296301	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9471123	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9471124	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9471129	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39512800-39521600	Weak transcription	Aorta	Aorta
2	chr6:39516800-39528800	Weak transcription	Ovary	ovary
3	chr6:39518200-39528000	Weak transcription	Fetal Stomach	stomach
4	chr6:39518400-39521600	Weak transcription	Right Atrium	heart
5	chr6:39519600-39521800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:39520000-39522000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:39520200-39521800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr6:39520200-39521800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:39520200-39522000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:39520400-39522600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:39520600-39522000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:39520800-39522200	Enhancers	Fetal Lung	lung
13	chr6:39520800-39522600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:39520800-39522800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:39521000-39521800	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:39521000-39522200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:39521000-39522200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:39521000-39523400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:39521200-39523200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:39521400-39522400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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