Variant report

Variant	rs9380876
Chromosome Location	chr6:39492993-39492994
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:39485932..39488385-chr6:39492203..39494440,2	K562	blood:
2	chr6:39488626..39490415-chr6:39490740..39493261,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10484823	0.80[AMR][1000 genomes]
rs11751784	0.82[ASN][1000 genomes]
rs11961693	0.82[ASN][1000 genomes]
rs11968704	0.81[ASN][1000 genomes]
rs12525519	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12528130	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12664369	0.83[ASN][1000 genomes]
rs13213488	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16892194	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2235817	0.82[ASN][1000 genomes]
rs2273063	0.80[ASN][1000 genomes]
rs35516457	0.82[AMR][1000 genomes]
rs3736735	0.84[ASN][1000 genomes]
rs4482968	0.83[ASN][1000 genomes]
rs4482969	0.83[ASN][1000 genomes]
rs4714257	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4714258	0.80[AMR][1000 genomes]
rs4714261	0.80[AMR][1000 genomes]
rs56951565	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57703896	0.80[ASN][1000 genomes]
rs59617761	0.85[ASN][1000 genomes]
rs6901155	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6913556	0.80[AMR][1000 genomes]
rs6919556	0.82[ASN][1000 genomes]
rs6928537	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6942355	0.82[ASN][1000 genomes]
rs73732127	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73732153	0.83[AMR][1000 genomes]
rs9357308	0.82[ASN][1000 genomes]
rs9357309	0.84[ASN][1000 genomes]
rs9357310	0.82[ASN][1000 genomes]
rs9357311	0.80[ASN][1000 genomes]
rs9367012	0.81[ASN][1000 genomes]
rs9367016	0.83[ASN][1000 genomes]
rs9369122	0.81[ASN][1000 genomes]
rs9369123	0.80[ASN][1000 genomes]
rs9380871	0.82[ASN][1000 genomes]
rs9380872	0.82[ASN][1000 genomes]
rs9380873	0.82[ASN][1000 genomes]
rs9380875	0.87[ASN][1000 genomes]
rs9394601	0.82[ASN][1000 genomes]
rs9394602	0.84[ASN][1000 genomes]
rs9394603	0.84[ASN][1000 genomes]
rs9394606	0.80[ASN][1000 genomes]
rs9394608	0.84[ASN][1000 genomes]
rs9394609	0.84[ASN][1000 genomes]
rs9471123	0.82[AMR][1000 genomes]
rs9471124	0.83[AMR][1000 genomes]
rs9471129	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv885823	chr6:39421715-39526867	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39485000-39493200	Enhancers	Fetal Lung	lung
2	chr6:39486200-39498200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:39488600-39497800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:39488600-39509400	Weak transcription	Brain Substantia Nigra	brain
5	chr6:39489600-39493800	Weak transcription	Brain Angular Gyrus	brain
6	chr6:39492400-39493200	Enhancers	Placenta	Placenta
7	chr6:39492400-39496000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:39492600-39497800	Weak transcription	Ovary	ovary
9	chr6:39492800-39498200	Weak transcription	Fetal Stomach	stomach

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