Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10807496	0.82[ASN][1000 genomes]
rs12198763	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13213275	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3807019	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3925002	0.89[ASN][1000 genomes]
rs4144579	0.83[ASN][1000 genomes]
rs4144580	0.83[ASN][1000 genomes]
rs4320370	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4323307	0.89[ASN][1000 genomes]
rs4398737	0.82[ASN][1000 genomes]
rs4410726	0.82[ASN][1000 genomes]
rs4599642	0.82[ASN][1000 genomes]
rs6459081	0.90[EUR][1000 genomes]
rs7739933	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7749276	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7755709	0.83[ASN][1000 genomes]
rs7756162	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7776071	0.83[ASN][1000 genomes]
rs9367641	0.83[ASN][1000 genomes]
rs9367642	0.82[ASN][1000 genomes]
rs9382507	0.90[ASN][1000 genomes]
rs9396105	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396107	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9396108	0.83[ASN][1000 genomes]
rs9464265	0.82[ASN][1000 genomes]
rs9475314	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9475318	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv948358	chr6:55351282-55477277	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1026411	chr6:55372845-55653498	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55384400-55410200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:55394000-55407200	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:55400400-55418600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:55404400-55407600	Weak transcription	Fetal Lung	lung

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