Variant report

Variant	rs936783
Chromosome Location	chr14:97391521-97391522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10132154	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1280079	0.89[AFR][1000 genomes]
rs6575604	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159359	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856223	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856224	1.00[YRI][hapmap]
rs856226	1.00[ASW][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856227	0.91[AFR][1000 genomes]
rs856228	0.85[AFR][1000 genomes]
rs856255	0.87[ASW][hapmap];1.00[YRI][hapmap]
rs864121	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs936784	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97379400-97411800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:97387200-97395200	Weak transcription	Fetal Brain Male	brain
3	chr14:97388000-97391600	Weak transcription	K562	blood
4	chr14:97388400-97397400	Weak transcription	Dnd41	blood
5	chr14:97390800-97405800	Weak transcription	Spleen	Spleen
6	chr14:97391000-97392600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:97391000-97392800	Enhancers	Primary B cells from peripheral blood	blood
8	chr14:97391200-97391600	Enhancers	Brain Germinal Matrix	brain
9	chr14:97391200-97391800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:97391200-97392000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr14:97391200-97392000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:97391200-97392200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr14:97391200-97392200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr14:97391200-97392200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr14:97391200-97392200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr14:97391200-97392200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:97391400-97391800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:97391400-97392000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr14:97391400-97392000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr14:97391400-97392000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr14:97391400-97392000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr14:97391400-97392000	Enhancers	Fetal Brain Female	brain
23	chr14:97391400-97392200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:97391400-97392400	Enhancers	Primary B cells from cord blood	blood
25	chr14:97391400-97392600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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