Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1280082	0.91[AFR][1000 genomes]
rs1385553	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1385554	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1683106	0.84[AFR][1000 genomes]
rs2062386	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2220192	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4900355	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4905565	0.81[AFR][1000 genomes]
rs4905569	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6575602	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs710264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022166	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856223	1.00[YRI][hapmap]
rs856224	0.84[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856226	0.87[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs856258	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856272	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs864121	1.00[YRI][hapmap]
rs9323956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs936784	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97379400-97411800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:97398000-97412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:97399200-97409600	Weak transcription	Dnd41	blood
4	chr14:97404600-97410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:97408600-97428600	Weak transcription	Thymus	Thymus

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