Variant report

Variant	rs856272
Chromosome Location	chr14:97416616-97416617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97406485..97409282-chr14:97415003..97417031,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1280082	0.96[AFR][1000 genomes]
rs1385553	1.00[AMR][1000 genomes]
rs1385554	1.00[AMR][1000 genomes]
rs1683106	0.93[AFR][1000 genomes]
rs2062386	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2220192	1.00[AMR][1000 genomes]
rs4900355	1.00[AMR][1000 genomes]
rs4905569	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6575602	1.00[AMR][1000 genomes]
rs710264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022166	1.00[AMR][1000 genomes]
rs856223	0.94[YRI][hapmap]
rs856224	0.89[LWK][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856226	1.00[MEX][hapmap];0.95[YRI][hapmap]
rs856255	0.87[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap]
rs856258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856260	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs864121	0.95[YRI][hapmap]
rs9323956	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs936784	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv902212	chr14:97413032-97474908	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97408600-97428600	Weak transcription	Thymus	Thymus
2	chr14:97409600-97419000	Strong transcription	Dnd41	blood
3	chr14:97415000-97417000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:97415000-97417800	Enhancers	Primary B cells from peripheral blood	blood
5	chr14:97415400-97417000	Enhancers	Primary B cells from cord blood	blood
6	chr14:97415800-97416800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr14:97415800-97416800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr14:97416000-97420400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:97416400-97416800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr14:97416400-97425600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:97416600-97418000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr14:97416600-97425000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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