Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1280082	0.98[AFR][1000 genomes]
rs1385553	1.00[AMR][1000 genomes]
rs1385554	1.00[AMR][1000 genomes]
rs1683106	0.91[AFR][1000 genomes]
rs2062386	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2220192	1.00[AMR][1000 genomes]
rs4900355	1.00[AMR][1000 genomes]
rs4905569	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6575602	1.00[AMR][1000 genomes]
rs710264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022166	1.00[AMR][1000 genomes]
rs856223	0.85[YRI][hapmap]
rs856224	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856226	0.94[YRI][hapmap]
rs856255	0.94[YRI][hapmap]
rs856258	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856272	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs864121	0.86[YRI][hapmap]
rs9323956	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs936784	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97398000-97412800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:97408600-97428600	Weak transcription	Thymus	Thymus
3	chr14:97409600-97419000	Strong transcription	Dnd41	blood
4	chr14:97411200-97415400	Weak transcription	Primary B cells from cord blood	blood
5	chr14:97411400-97412800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr14:97411600-97412600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr14:97411800-97412000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr14:97411800-97412200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr14:97411800-97412400	Enhancers	Primary T cells from cord blood	blood
10	chr14:97411800-97412400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr14:97411800-97412400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr14:97411800-97412600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:97411800-97412800	Enhancers	Primary T helper naive cells from peripheral blood	blood

Quick Search: