Variant report

Variant	rs4900355
Chromosome Location	chr14:97378715-97378716
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10136629	0.89[ASW][hapmap]
rs1385553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1385554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2062386	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2220192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4905556	0.89[ASW][hapmap]
rs4905565	1.00[AFR][1000 genomes]
rs4905569	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6575602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs710264	1.00[AMR][1000 genomes]
rs8022166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856223	0.83[YRI][hapmap]
rs856224	0.94[LWK][hapmap];0.95[MKK][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856226	1.00[MEX][hapmap];0.84[YRI][hapmap]
rs856255	0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[YRI][hapmap]
rs856258	1.00[AMR][1000 genomes]
rs856260	1.00[AMR][1000 genomes]
rs856272	1.00[AMR][1000 genomes]
rs864121	0.84[YRI][hapmap]
rs9323956	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs936784	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97368600-97391400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:97376400-97378800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:97376600-97379000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:97376800-97387600	Weak transcription	Thymus	Thymus
5	chr14:97377000-97378800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:97377200-97380400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:97377400-97378800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:97377400-97379000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr14:97377400-97379400	Enhancers	Primary T cells from cord blood	blood
10	chr14:97377600-97379200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr14:97377600-97379800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr14:97377600-97380600	Weak transcription	Dnd41	blood
13	chr14:97377800-97379000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr14:97377800-97379000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr14:97378000-97379000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr14:97378000-97379000	Enhancers	Spleen	Spleen
17	chr14:97378200-97378800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr14:97378200-97379000	Enhancers	Fetal Muscle Leg	muscle
19	chr14:97378200-97379200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr14:97378400-97378800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:97378400-97383000	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links