Variant report

Variant	rs9370332
Chromosome Location	chr6:54727075-54727076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54718981..54722041-chr6:54724023..54729682,8	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10485136	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs10948866	0.82[CHD][hapmap]
rs1115159	0.84[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1155749	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs12194012	0.86[ASW][hapmap];0.87[LWK][hapmap];0.83[MEX][hapmap];0.87[AFR][1000 genomes]
rs1472679	0.82[CHD][hapmap]
rs1503133	0.83[MEX][hapmap]
rs1503147	0.83[CHB][hapmap]
rs1910356	0.87[AFR][1000 genomes]
rs2064432	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs4141552	0.84[CHB][hapmap]
rs4712081	0.81[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[TSI][hapmap]
rs6900072	0.87[AFR][1000 genomes]
rs6937981	0.87[AFR][1000 genomes]
rs7382364	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7453866	0.84[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7752214	0.86[ASW][hapmap]
rs7761336	0.82[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap]
rs7762606	0.86[ASW][hapmap]
rs7772421	0.99[ASN][1000 genomes]
rs924712	0.84[CHB][hapmap]
rs9296771	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs932452	0.81[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs9367597	0.81[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs9370333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382390	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9396006	0.93[JPT][hapmap]
rs973205	0.82[CHD][hapmap]
rs995851	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54715400-54731200	Weak transcription	Hela-S3	cervix
2	chr6:54721200-54730000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:54724200-54727400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr6:54725400-54731400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:54725600-54729800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:54725600-54737400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:54725600-54737600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:54725800-54727200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:54725800-54727200	Enhancers	Stomach Mucosa	stomach
10	chr6:54725800-54730000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:54725800-54730000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:54725800-54730000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:54726200-54727400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:54726400-54728400	Enhancers	Fetal Intestine Small	intestine
15	chr6:54726600-54727200	Enhancers	Fetal Heart	heart
16	chr6:54726600-54728400	Enhancers	Fetal Intestine Large	intestine
17	chr6:54726600-54739600	Weak transcription	Small Intestine	intestine
18	chr6:54726800-54727200	Enhancers	Duodenum Mucosa	Duodenum
19	chr6:54726800-54727200	Weak transcription	HMEC	breast
20	chr6:54727000-54727200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:54727000-54727200	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr6:54727000-54727200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
23	chr6:54727000-54727400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:54727000-54727400	Enhancers	Colonic Mucosa	Colon
25	chr6:54727000-54727400	Enhancers	Fetal Kidney	kidney
26	chr6:54727000-54727400	Enhancers	Gastric	stomach
27	chr6:54727000-54727400	Enhancers	Pancreas	Pancrea
28	chr6:54727000-54728600	Strong transcription	NHEK	skin
29	chr6:54727000-54730000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:54727000-54730600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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