Variant report

Variant	rs9370483
Chromosome Location	chr6:13818731-13818732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:13818640-13818891	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:13818619-13819088	HepG2	liver:	n/a	n/a
3	NR2F2	chr6:13818481-13819139	HepG2	liver:	n/a	chr6:13818701-13818716 chr6:13818775-13818790
4	FOXA1	chr6:13818492-13819014	HepG2	liver:	n/a	n/a
5	FOXA2	chr6:13818612-13818990	HepG2	liver:	n/a	n/a
6	HDAC2	chr6:13818584-13818906	HepG2	liver:	n/a	chr6:13818706-13818714
7	FOXA1	chr6:13818508-13819071	HepG2	liver:	n/a	n/a
8	EP300	chr6:13818524-13818885	HepG2	liver:	n/a	n/a
9	NR2F2	chr6:13818401-13819048	HepG2	liver:	n/a	chr6:13818701-13818716 chr6:13818775-13818790
10	FOXA2	chr6:13818448-13819226	HepG2	liver:	n/a	n/a
11	RXRA	chr6:13818518-13818937	HepG2	liver:	n/a	chr6:13818778-13818787 chr6:13818779-13818793
12	SP1	chr6:13818538-13819032	HepG2	liver:	n/a	n/a
13	RXRA	chr6:13818444-13818965	HepG2	liver:	n/a	chr6:13818778-13818787 chr6:13818779-13818793
14	FOXA1	chr6:13818497-13819034	HepG2	liver:	n/a	n/a
15	RCOR1	chr6:13818549-13818941	HepG2	liver:	n/a	n/a
16	TEAD4	chr6:13818505-13819057	HepG2	liver:	n/a	n/a
17	HNF4G	chr6:13818588-13818934	HepG2	liver:	n/a	chr6:13818706-13818721 chr6:13818704-13818716
18	MXI1	chr6:13818651-13818882	HepG2	liver:	n/a	n/a
19	BHLHE40	chr6:13818608-13818892	HepG2	liver:	n/a	n/a
20	HDAC2	chr6:13818539-13818998	HepG2	liver:	n/a	chr6:13818706-13818714
21	HNF4A	chr6:13818564-13818908	HepG2	liver:	n/a	chr6:13818706-13818721 chr6:13818704-13818716
22	EP300	chr6:13818499-13818943	HepG2	liver:	n/a	n/a
23	TEAD4	chr6:13818674-13818872	H1-hESC	embryonic stem cell:	n/a	n/a
24	HNF4A	chr6:13818608-13818853	HepG2	liver:	n/a	chr6:13818706-13818721 chr6:13818704-13818716
25	FOXA1	chr6:13818473-13819115	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
MCUR1	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4715573	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9396165	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9475460	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9475494	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13815400-13820200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:13816200-13820200	Weak transcription	K562	blood
3	chr6:13818000-13819400	Enhancers	HepG2	liver
4	chr6:13818400-13819000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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