Variant report

Variant	rs9475460
Chromosome Location	chr6:13798489-13798490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13797361..13801378-chr6:13811915..13815020,5	MCF-7	breast:
2	chr6:13710748..13713652-chr6:13797013..13800432,3	MCF-7	breast:
3	chr6:13795502..13799079-chr6:13811264..13816193,8	MCF-7	breast:
4	chr6:13798318..13799850-chr6:13805538..13807303,2	K562	blood:
5	chr6:13796697..13799151-chr6:13873645..13875272,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction
ENSG00000050393	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4715573	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9370483	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9396165	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9475494	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13781000-13801200	Weak transcription	Psoas Muscle	Psoas
3	chr6:13781000-13802000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:13785000-13800800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:13785200-13801600	Weak transcription	Gastric	stomach
6	chr6:13785400-13800600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:13786000-13801200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:13787600-13799400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:13787800-13800600	Weak transcription	Brain Anterior Caudate	brain
10	chr6:13787800-13801200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:13788000-13799000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:13788000-13799000	Weak transcription	Right Ventricle	heart
13	chr6:13788000-13799200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:13788000-13799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:13788000-13799200	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:13788000-13801200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:13788000-13802600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:13788000-13810600	Weak transcription	Fetal Heart	heart
19	chr6:13788000-13810800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:13788000-13812200	Weak transcription	Aorta	Aorta
21	chr6:13788000-13813200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:13788000-13813400	Weak transcription	Brain Germinal Matrix	brain
23	chr6:13788200-13807600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:13788400-13800800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:13788400-13801200	Weak transcription	Esophagus	oesophagus
26	chr6:13788400-13810600	Weak transcription	Colonic Mucosa	Colon
27	chr6:13788600-13810800	Weak transcription	Stomach Mucosa	stomach
28	chr6:13788800-13810600	Weak transcription	Small Intestine	intestine
29	chr6:13788800-13812200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:13788800-13813600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:13789000-13799000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:13789600-13801000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:13789600-13803800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:13790000-13799400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:13790400-13799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:13790800-13799200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:13790800-13799400	Weak transcription	Fetal Lung	lung
38	chr6:13791200-13798800	Weak transcription	Hela-S3	cervix
39	chr6:13792400-13799000	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:13792400-13802600	Weak transcription	Pancreas	Pancrea
41	chr6:13792600-13799000	Weak transcription	HSMMtube	muscle
42	chr6:13792600-13810800	Weak transcription	Spleen	Spleen
43	chr6:13792800-13799200	Weak transcription	Brain Substantia Nigra	brain
44	chr6:13793000-13799000	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr6:13793000-13799200	Weak transcription	Left Ventricle	heart
46	chr6:13793000-13813200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr6:13793800-13799000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:13793800-13799000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr6:13794000-13799200	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:13794000-13800800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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