Variant report

Variant	rs9373311
Chromosome Location	chr6:141804925-141804926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10872536	0.89[EUR][1000 genomes]
rs11155185	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11751835	0.89[EUR][1000 genomes]
rs12525079	0.86[EUR][1000 genomes]
rs4386830	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4472370	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6905051	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8180607	0.87[EUR][1000 genomes]
rs9373314	0.89[EUR][1000 genomes]
rs9376624	0.83[YRI][hapmap]
rs9376625	0.83[YRI][hapmap]
rs9376628	0.88[EUR][1000 genomes]
rs9389927	0.89[EUR][1000 genomes]
rs9389929	0.89[EUR][1000 genomes]
rs9403308	0.87[EUR][1000 genomes]
rs9403314	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141803800-141805000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
2	chr6:141803800-141805000	Active TSS	Fetal Muscle Leg	muscle
3	chr6:141803800-141805200	Active TSS	Primary T cells fromperipheralblood	blood
4	chr6:141803800-141805200	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr6:141803800-141805200	Active TSS	NHLF	lung
6	chr6:141803800-141805400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:141803800-141805400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:141803800-141806000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:141803800-141806000	Flanking Active TSS	Dnd41	blood
10	chr6:141803800-141806200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:141803800-141806200	Active TSS	Right Atrium	heart
12	chr6:141804000-141805000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:141804000-141805000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:141804000-141805000	Active TSS	Brain Angular Gyrus	brain
15	chr6:141804000-141805000	Active TSS	Brain Substantia Nigra	brain
16	chr6:141804000-141805000	Active TSS	Colonic Mucosa	Colon
17	chr6:141804000-141805000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr6:141804000-141805000	Active TSS	Rectal Smooth Muscle	rectum
19	chr6:141804000-141805200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
20	chr6:141804000-141805200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:141804000-141805200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:141804000-141805200	Active TSS	Aorta	Aorta
23	chr6:141804000-141805200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:141804000-141805200	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr6:141804000-141805200	Active TSS	Fetal Lung	lung
26	chr6:141804000-141805200	Active TSS	Fetal Muscle Trunk	muscle
27	chr6:141804000-141805200	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr6:141804000-141805200	Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr6:141804000-141805400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr6:141804000-141805400	Active TSS	A549	lung
31	chr6:141804000-141805400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr6:141804000-141806200	Enhancers	Fetal Thymus	thymus
33	chr6:141804200-141805200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr6:141804200-141805200	Flanking Active TSS	Primary hematopoietic stem cells	blood
35	chr6:141804200-141805200	Active TSS	Psoas Muscle	Psoas
36	chr6:141804200-141805200	Active TSS	Stomach Smooth Muscle	stomach
37	chr6:141804200-141805200	Flanking Active TSS	NH-A	brain
38	chr6:141804200-141805400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr6:141804200-141805400	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr6:141804400-141805000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:141804400-141805000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:141804400-141805000	Enhancers	Brain Germinal Matrix	brain
43	chr6:141804400-141805000	Active TSS	Thymus	Thymus
44	chr6:141804400-141805000	Active TSS	GM12878-XiMat	blood
45	chr6:141804400-141805200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:141804400-141805200	Active TSS	Brain Cingulate Gyrus	brain
47	chr6:141804400-141805200	Flanking Active TSS	HUVEC	blood vessel
48	chr6:141804600-141805000	Active TSS	Primary B cells from cord blood	blood
49	chr6:141804600-141805000	Active TSS	Primary B cells from peripheral blood	blood
50	chr6:141804600-141805000	Active TSS	Primary T cells from cord blood	blood

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