Variant report

Variant	rs11155185
Chromosome Location	chr6:141806003-141806004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10499226	0.86[EUR][1000 genomes]
rs10872536	0.83[EUR][1000 genomes]
rs11155189	0.87[EUR][1000 genomes]
rs11751835	0.83[EUR][1000 genomes]
rs12525079	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17070986	1.00[CHB][hapmap]
rs4386830	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4472370	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55959773	0.86[EUR][1000 genomes]
rs62430845	0.86[EUR][1000 genomes]
rs6905051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8180607	0.80[EUR][1000 genomes]
rs9373311	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9373314	0.83[EUR][1000 genomes]
rs9376628	0.82[EUR][1000 genomes]
rs9376630	0.85[EUR][1000 genomes]
rs9389927	0.83[EUR][1000 genomes]
rs9389929	0.83[EUR][1000 genomes]
rs9389931	0.84[EUR][1000 genomes]
rs9399371	0.87[EUR][1000 genomes]
rs9399372	0.87[EUR][1000 genomes]
rs9403308	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9403314	0.83[EUR][1000 genomes]
rs9403315	0.87[EUR][1000 genomes]
rs9403317	0.86[EUR][1000 genomes]
rs9403320	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141803800-141806200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:141803800-141806200	Active TSS	Right Atrium	heart
3	chr6:141804000-141806200	Enhancers	Fetal Thymus	thymus
4	chr6:141804600-141806200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:141804600-141807000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:141804800-141806200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:141805000-141806200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr6:141805000-141806200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:141805000-141806200	Enhancers	HMEC	breast
10	chr6:141805200-141806200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:141805200-141806200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:141805200-141806200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:141805200-141806200	Enhancers	HSMM	muscle
14	chr6:141805200-141806800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:141805200-141807000	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:141805200-141807000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:141805200-141807000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:141805200-141807000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:141805200-141809400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:141805200-141809600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:141805400-141806200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:141805400-141806200	Enhancers	Primary T cells from cord blood	blood
23	chr6:141805400-141806200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:141805400-141806200	Enhancers	Fetal Muscle Leg	muscle
25	chr6:141805400-141806200	Enhancers	NHDF-Ad	bronchial
26	chr6:141805400-141806400	Weak transcription	Fetal Heart	heart
27	chr6:141805400-141806400	Enhancers	Osteobl	bone
28	chr6:141805400-141806800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:141805400-141807000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:141805400-141807000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr6:141805600-141806200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr6:141805600-141806200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:141805600-141806200	ZNF genes & repeats	GM12878-XiMat	blood
34	chr6:141805800-141806200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr6:141805800-141806200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr6:141805800-141806800	Enhancers	Primary B cells from cord blood	blood
37	chr6:141805800-141809400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:141806000-141806200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:141806000-141806200	Enhancers	Brain Germinal Matrix	brain
40	chr6:141806000-141806200	Enhancers	Psoas Muscle	Psoas
41	chr6:141806000-141806400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:141806000-141806600	Enhancers	NHLF	lung
43	chr6:141806000-141806800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:141806000-141807000	Enhancers	Primary B cells from peripheral blood	blood
45	chr6:141806000-141807000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:141806000-141807000	Enhancers	Dnd41	blood
47	chr6:141806000-141809600	Weak transcription	Adipose Nuclei	Adipose
48	chr6:141806000-141809600	Weak transcription	HUVEC	blood vessel

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