Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:141872843..141874835-chr6:141881492..141883832,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10499226	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10872536	0.85[EUR][1000 genomes]
rs11155185	0.85[EUR][1000 genomes]
rs11155189	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11751835	0.85[EUR][1000 genomes]
rs11757988	0.84[ASN][1000 genomes]
rs12525079	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs55959773	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62430845	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6905051	0.85[EUR][1000 genomes]
rs8180607	0.87[EUR][1000 genomes]
rs9373314	0.84[EUR][1000 genomes]
rs9376628	0.86[EUR][1000 genomes]
rs9376630	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376632	0.84[ASN][1000 genomes]
rs9389926	0.85[ASN][1000 genomes]
rs9389927	0.85[EUR][1000 genomes]
rs9389929	0.85[EUR][1000 genomes]
rs9389931	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399371	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399372	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399377	0.85[JPT][hapmap]
rs9403308	0.89[EUR][1000 genomes]
rs9403314	0.85[EUR][1000 genomes]
rs9403315	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403317	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141875400-141883400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:141881600-141884800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:141881800-141882200	Enhancers	Fetal Heart	heart
4	chr6:141881800-141882600	Enhancers	Pancreatic Islets	Pancreatic Islet

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