Variant report

Variant	rs9373358
Chromosome Location	chr6:143048195-143048196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12192768	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12199482	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs169098	0.82[EUR][1000 genomes]
rs197475	0.82[EUR][1000 genomes]
rs197477	0.82[EUR][1000 genomes]
rs197482	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs197491	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3383	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs3850224	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3850225	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3900201	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895597	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896592	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4896593	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs517096	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56146803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57584479	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7349872	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9376706	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390022	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143040400-143049200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143043200-143050000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:143044400-143049200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:143044400-143049200	Weak transcription	HMEC	breast
5	chr6:143044600-143049600	Weak transcription	GM12878-XiMat	blood
6	chr6:143045200-143048400	Weak transcription	Fetal Brain Male	brain
7	chr6:143045800-143048800	Enhancers	Placenta	Placenta
8	chr6:143046200-143048600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:143046400-143048600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:143046400-143049200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:143046400-143049400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:143046400-143051000	Weak transcription	Aorta	Aorta
13	chr6:143046600-143048600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:143046600-143049000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:143046600-143049200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:143046600-143049400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:143046600-143049400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:143046600-143049600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:143046600-143049600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:143047800-143048400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:143047800-143048400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:143047800-143048400	Enhancers	NH-A	brain
23	chr6:143047800-143049400	Enhancers	Esophagus	oesophagus
24	chr6:143048000-143048200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:143048000-143048200	Enhancers	Ovary	ovary
26	chr6:143048000-143048200	Enhancers	Spleen	Spleen
27	chr6:143048000-143048600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:143048000-143049400	Enhancers	Pancreas	Pancrea
29	chr6:143048000-143051000	Enhancers	Fetal Intestine Small	intestine
30	chr6:143048000-143051200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:143048000-143051600	Enhancers	Fetal Intestine Large	intestine

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