Variant report

Variant	rs9376706
Chromosome Location	chr6:143044259-143044260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12192768	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12199482	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197476	0.81[EUR][1000 genomes]
rs197482	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs197491	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3383	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs3850224	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3850225	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3900201	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895597	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4896592	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896593	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs517096	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56146803	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57584479	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7349872	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9373358	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390022	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143040400-143049200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143040800-143044600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:143042600-143046000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:143042800-143046000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:143043200-143044600	Enhancers	GM12878-XiMat	blood
6	chr6:143043200-143046000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:143043200-143050000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:143043400-143046000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:143043800-143044400	Weak transcription	Aorta	Aorta
10	chr6:143043800-143044600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:143044000-143044400	Enhancers	HMEC	breast
12	chr6:143044000-143044600	Bivalent Enhancer	HepG2	liver
13	chr6:143044200-143044400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:143044200-143044400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:143044200-143044400	Enhancers	Fetal Brain Male	brain
16	chr6:143044200-143044400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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