Variant report

Variant	rs9373591
Chromosome Location	chr6:149710202-149710203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149706464..149708710-chr6:149709911..149712355,2	MCF-7	breast:
2	chr6:149708149..149710549-chr6:149711025..149713026,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs17086451	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2341783	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2341784	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2744427	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2744428	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2744433	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2744434	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2789487	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2789489	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2789490	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2789500	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3734296	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4360154	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs472620	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs472810	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs474369	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs478531	0.84[EUR][1000 genomes]
rs478767	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs480526	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs480778	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs481769	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4897117	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs490529	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs492956	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs494340	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs501926	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs504762	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs511105	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs513923	0.85[ASN][1000 genomes]
rs515133	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs518879	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs522646	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs527971	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs532008	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs532250	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs533026	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs538386	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs554926	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs556335	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs559052	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs559204	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs564405	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs565825	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs570442	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs588028	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs60006373	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs600739	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs630642	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs641068	0.85[ASN][1000 genomes]
rs652514	0.85[ASN][1000 genomes]
rs652921	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs663625	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs92605	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9377216	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9390676	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399686	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9404032	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9404034	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9404035	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149687800-149726400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149697600-149713600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:149700400-149728400	Weak transcription	Hela-S3	cervix
4	chr6:149700400-149732400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:149700600-149721200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:149700600-149721200	Weak transcription	Colonic Mucosa	Colon
7	chr6:149700600-149721200	Weak transcription	Right Ventricle	heart
8	chr6:149700600-149730800	Weak transcription	Fetal Brain Male	brain
9	chr6:149700800-149721000	Weak transcription	K562	blood
10	chr6:149700800-149721200	Weak transcription	Aorta	Aorta
11	chr6:149700800-149732800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:149701000-149710800	Weak transcription	NHDF-Ad	bronchial
13	chr6:149701200-149721200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:149701400-149710800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:149701400-149717400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:149701400-149717800	Weak transcription	Fetal Kidney	kidney
17	chr6:149701400-149721200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:149701400-149730800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:149701400-149734200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:149701600-149712600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:149701600-149733600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:149702400-149718800	Weak transcription	HUVEC	blood vessel
23	chr6:149702400-149721200	Weak transcription	Fetal Brain Female	brain
24	chr6:149703000-149716000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:149703200-149717200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:149703200-149718400	Weak transcription	Thymus	Thymus
27	chr6:149703200-149719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:149703200-149720400	Weak transcription	Brain Angular Gyrus	brain
29	chr6:149703200-149721200	Weak transcription	Spleen	Spleen
30	chr6:149703400-149720000	Weak transcription	Adipose Nuclei	Adipose
31	chr6:149703400-149721000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:149703400-149721200	Weak transcription	HSMMtube	muscle
33	chr6:149703400-149730600	Weak transcription	Brain Germinal Matrix	brain
34	chr6:149703600-149730400	Weak transcription	NHLF	lung
35	chr6:149704000-149713600	Weak transcription	HepG2	liver
36	chr6:149704800-149710400	Weak transcription	Osteobl	bone
37	chr6:149704800-149718600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:149705000-149718600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:149705200-149711400	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr6:149705200-149712600	Weak transcription	Fetal Stomach	stomach
41	chr6:149705200-149713400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:149705200-149714400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:149705200-149717000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:149705200-149719000	Weak transcription	Fetal Muscle Leg	muscle
45	chr6:149705200-149721200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:149705200-149721200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:149705200-149734600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:149705400-149713600	Weak transcription	Placenta	Placenta
49	chr6:149705400-149718800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr6:149705600-149713600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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