Variant report

Variant	rs9404032
Chromosome Location	chr6:149703548-149703549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149681410..149684153-chr6:149703161..149705168,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs17086451	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2341783	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2341784	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2744427	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2744428	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2744431	0.83[EUR][1000 genomes]
rs2744433	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2744434	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2789487	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2789489	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2789490	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2789500	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3734296	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4360154	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs472620	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs472810	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs474369	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs478531	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs478767	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs480526	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs480778	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs481769	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4897117	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs490529	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs492956	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs494340	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs501926	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs504762	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs511105	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs513923	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs515133	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs518879	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs522646	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs527971	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs532008	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs532250	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs533026	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs538386	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs554926	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs556335	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs559052	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs559204	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs564405	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs565825	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs570442	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs588028	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60006373	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs600739	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs630642	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs641068	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs652514	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs652921	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs663625	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs674919	0.83[EUR][1000 genomes]
rs681919	0.87[EUR][1000 genomes]
rs92605	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373591	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9377216	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9377217	0.83[EUR][1000 genomes]
rs9390676	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9399686	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9404034	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9404035	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9404037	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149682600-149709200	Weak transcription	Psoas Muscle	Psoas
2	chr6:149686000-149709000	Weak transcription	Stomach Mucosa	stomach
3	chr6:149687800-149726400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:149695400-149709600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:149697200-149705400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr6:149697400-149706400	Strong transcription	Dnd41	blood
7	chr6:149697400-149708200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:149697600-149709000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:149697600-149713600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:149698400-149709600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:149698600-149703600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:149698800-149703800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:149698800-149705200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr6:149698800-149705200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:149698800-149705800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:149698800-149707600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:149699000-149704000	Strong transcription	HepG2	liver
18	chr6:149699000-149704800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:149699000-149704800	Strong transcription	Osteobl	bone
20	chr6:149699000-149705400	Strong transcription	Primary T cells from cord blood	blood
21	chr6:149699000-149706800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:149699000-149707000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:149699000-149707200	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:149699000-149707800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:149699200-149703600	Strong transcription	Primary B cells from cord blood	blood
26	chr6:149699200-149703600	Strong transcription	Primary B cells from peripheral blood	blood
27	chr6:149699200-149703600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:149699200-149703600	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:149699200-149705000	Strong transcription	Fetal Muscle Trunk	muscle
30	chr6:149699200-149705200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:149699200-149705200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:149699200-149705200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:149699200-149705200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:149699200-149705200	Strong transcription	Fetal Intestine Large	intestine
35	chr6:149699200-149705200	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:149699200-149705200	Strong transcription	Fetal Stomach	stomach
37	chr6:149699200-149705200	Strong transcription	Lung	lung
38	chr6:149699200-149705200	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:149699200-149705200	Strong transcription	Stomach Smooth Muscle	stomach
40	chr6:149699200-149705400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:149699200-149705400	Strong transcription	Duodenum Mucosa	Duodenum
42	chr6:149699200-149705400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:149699200-149705400	Strong transcription	Fetal Lung	lung
44	chr6:149699200-149705400	Strong transcription	Placenta	Placenta
45	chr6:149699200-149705600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:149699400-149704200	Strong transcription	Fetal Intestine Small	intestine
47	chr6:149700400-149709000	Weak transcription	Fetal Heart	heart
48	chr6:149700400-149728400	Weak transcription	Hela-S3	cervix
49	chr6:149700400-149732400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:149700600-149705000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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