Variant report

Variant	rs9373592
Chromosome Location	chr6:149733255-149733256
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs2143076	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2179367	0.90[EUR][1000 genomes]
rs2262617	0.93[EUR][1000 genomes]
rs2744432	0.84[AMR][1000 genomes]
rs2789488	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2789492	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs489551	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4895788	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4895789	0.92[EUR][1000 genomes]
rs4897124	0.93[EUR][1000 genomes]
rs4897125	0.90[EUR][1000 genomes]
rs504985	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs506268	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs511100	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs514839	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs521845	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs536203	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs537354	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs540538	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs544947	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs560051	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs562428	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs564961	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs577001	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs579789	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs580011	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs585022	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs628488	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs638407	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs652807	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570965	0.90[ASN][1000 genomes]
rs909793	0.86[ASN][1000 genomes]
rs9285519	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9322178	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373589	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9377212	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9377218	0.88[ASN][1000 genomes]
rs9390677	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149701400-149734200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:149701600-149733600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:149705200-149734600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:149713800-149735400	Weak transcription	Small Intestine	intestine
6	chr6:149715600-149733600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:149721800-149734000	Weak transcription	Right Ventricle	heart
8	chr6:149721800-149743800	Weak transcription	Lung	lung
9	chr6:149721800-149744800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:149721800-149745200	Weak transcription	Pancreas	Pancrea
11	chr6:149722000-149745000	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:149725200-149744600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:149725600-149734400	Weak transcription	HepG2	liver
14	chr6:149726600-149733400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:149727600-149733400	Strong transcription	Primary hematopoietic stem cells	blood
16	chr6:149728200-149734000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:149728200-149744600	Weak transcription	Fetal Intestine Small	intestine
18	chr6:149728800-149733400	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr6:149729400-149733400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:149729400-149733600	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:149729400-149734000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:149729800-149735000	Enhancers	Fetal Heart	heart
23	chr6:149730200-149733400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:149730200-149733800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:149730200-149735600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:149730400-149733400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:149730400-149733400	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr6:149730400-149733400	Strong transcription	HMEC	breast
29	chr6:149730400-149735600	Strong transcription	Fetal Thymus	thymus
30	chr6:149730600-149733600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:149730600-149744400	Weak transcription	NHDF-Ad	bronchial
32	chr6:149730800-149733600	Strong transcription	Primary T cells from cord blood	blood
33	chr6:149730800-149735000	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr6:149731200-149733600	Weak transcription	Fetal Kidney	kidney
35	chr6:149731400-149734200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr6:149731400-149734400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:149731400-149734600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr6:149731400-149734800	Weak transcription	Fetal Brain Male	brain
39	chr6:149731400-149736600	Weak transcription	Fetal Stomach	stomach
40	chr6:149731400-149736800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr6:149731400-149738800	Weak transcription	A549	lung
42	chr6:149731400-149743800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:149731600-149736400	Weak transcription	Colonic Mucosa	Colon
44	chr6:149731600-149738800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:149731600-149744200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:149731600-149744400	Weak transcription	Brain Anterior Caudate	brain
47	chr6:149731600-149744600	Weak transcription	NHLF	lung
48	chr6:149731600-149745200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr6:149731600-149745200	Weak transcription	Left Ventricle	heart
50	chr6:149731600-149745200	Weak transcription	Rectal Smooth Muscle	rectum

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