Variant report

Variant	rs4897125
Chromosome Location	chr6:149766208-149766209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149757368..149759713-chr6:149765073..149766703,2	K562	blood:
2	chr6:149764839..149766396-chr6:149774052..149775951,2	MCF-7	breast:
3	chr6:149762143..149764363-chr6:149765543..149768268,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1001242	0.83[ASN][1000 genomes]
rs1074495	0.86[ASN][1000 genomes]
rs1934117	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2007062	0.83[ASN][1000 genomes]
rs2143076	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs2153219	0.84[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2179367	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2262617	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2744430	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2789488	0.83[EUR][1000 genomes]
rs2789492	0.87[EUR][1000 genomes]
rs2789493	0.86[ASN][1000 genomes]
rs2789495	0.88[ASN][1000 genomes]
rs2789496	0.84[ASN][1000 genomes]
rs2789498	0.82[ASN][1000 genomes]
rs2789501	0.85[JPT][hapmap]
rs3765290	0.81[ASN][1000 genomes]
rs475681	0.82[ASN][1000 genomes]
rs4895788	0.95[EUR][1000 genomes]
rs4895789	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4897124	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs504985	0.91[CEU][hapmap]
rs514839	0.91[CEU][hapmap]
rs521845	0.91[CEU][hapmap]
rs536203	0.87[CEU][hapmap]
rs537354	0.87[CEU][hapmap]
rs540538	0.87[CEU][hapmap]
rs556775	0.81[JPT][hapmap]
rs560051	0.87[CEU][hapmap]
rs562428	0.86[CEU][hapmap]
rs577001	0.87[CEU][hapmap]
rs585022	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs587155	0.82[ASN][1000 genomes]
rs626755	0.95[JPT][hapmap]
rs632360	0.85[ASN][1000 genomes]
rs634440	0.88[ASN][1000 genomes]
rs638407	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs652807	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs656461	0.85[JPT][hapmap]
rs760897	0.85[ASN][1000 genomes]
rs805027	0.81[ASN][1000 genomes]
rs9285519	0.91[CEU][hapmap]
rs9322178	0.91[CEU][hapmap]
rs9373589	0.91[CEU][hapmap]
rs9373592	0.90[EUR][1000 genomes]
rs9390677	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3406755	chr6:149763459-149768057	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3368142	chr6:149764359-149767257	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3358632	chr6:149764809-149767607	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149753400-149770000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:149753600-149768400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:149753600-149769600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:149760600-149766600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:149761600-149769600	Weak transcription	Primary B cells from cord blood	blood
6	chr6:149762600-149770800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:149762800-149771000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:149763200-149770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:149763200-149771000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:149763200-149771400	Weak transcription	Pancreas	Pancrea
11	chr6:149764600-149768600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr6:149764800-149771400	Weak transcription	Spleen	Spleen
13	chr6:149765000-149766400	Weak transcription	Left Ventricle	heart
14	chr6:149765200-149771400	Weak transcription	Brain Anterior Caudate	brain
15	chr6:149765800-149766800	Enhancers	Fetal Heart	heart
16	chr6:149765800-149767600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:149766000-149766600	Weak transcription	Right Ventricle	heart
18	chr6:149766000-149766800	Enhancers	Lung	lung
19	chr6:149766000-149767000	Flanking Active TSS	HepG2	liver
20	chr6:149766000-149767400	Enhancers	HSMM	muscle
21	chr6:149766000-149767600	Enhancers	HSMMtube	muscle
22	chr6:149766000-149768200	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr6:149766000-149769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:149766000-149771400	Weak transcription	Right Atrium	heart
25	chr6:149766200-149766400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:149766200-149771000	Weak transcription	GM12878-XiMat	blood
27	chr6:149766200-149771200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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