Variant report

Variant	rs656461
Chromosome Location	chr6:149798835-149798836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149798641..149801260-chr6:149810434..149812141,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1001242	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1074495	0.90[EUR][1000 genomes]
rs1339185	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1934117	0.89[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs2007062	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2153219	0.89[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2341783	0.87[ASW][hapmap]
rs2744430	0.81[ASN][1000 genomes]
rs2789493	0.90[EUR][1000 genomes]
rs2789495	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2789496	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2789498	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2789501	0.94[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3765290	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs475681	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4895789	0.83[JPT][hapmap]
rs512685	1.00[ASW][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs556775	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs587155	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62441728	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs626755	0.94[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap]
rs632360	0.90[EUR][1000 genomes]
rs634440	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs664951	0.90[EUR][1000 genomes]
rs760897	0.90[EUR][1000 genomes]
rs805027	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs909793	1.00[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs9377218	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149776800-149802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:149782200-149802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:149783200-149802400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:149789400-149806000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:149790200-149802000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:149790400-149802200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:149791000-149799000	Genic enhancers	Primary B cells from cord blood	blood
8	chr6:149792000-149800200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:149792600-149803000	Weak transcription	Fetal Brain Female	brain
10	chr6:149793200-149801800	Weak transcription	Thymus	Thymus
11	chr6:149794400-149800000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:149795000-149799800	Weak transcription	Esophagus	oesophagus
13	chr6:149795000-149801800	Genic enhancers	Primary B cells from peripheral blood	blood
14	chr6:149795000-149802000	Weak transcription	Placenta	Placenta
15	chr6:149795200-149802800	Weak transcription	Right Atrium	heart
16	chr6:149795400-149800600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:149795400-149801200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:149795600-149801600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:149795600-149801800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:149795600-149802800	Weak transcription	Fetal Intestine Small	intestine
21	chr6:149795800-149801800	Weak transcription	Lung	lung
22	chr6:149796000-149799800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:149796000-149801200	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr6:149796000-149802000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:149796000-149803000	Weak transcription	Right Ventricle	heart
26	chr6:149796400-149799800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:149796400-149802200	Weak transcription	Spleen	Spleen
28	chr6:149796600-149799800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:149796600-149801000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:149796600-149802000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:149796600-149802600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:149796600-149803400	Weak transcription	HepG2	liver
33	chr6:149797000-149799200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr6:149797000-149802000	Weak transcription	Small Intestine	intestine
35	chr6:149798200-149799000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
36	chr6:149798400-149799000	Flanking Active TSS	GM12878-XiMat	blood
37	chr6:149798400-149799400	Enhancers	Primary T cells fromperipheralblood	blood
38	chr6:149798400-149799800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr6:149798800-149799000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:149798800-149800200	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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