Variant report

Variant	rs805027
Chromosome Location	chr6:149770676-149770677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149769726..149773853-chr6:149775332..149778151,3	K562	blood:

Variant related genes	Relation type
ENSG00000178199	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1001242	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1074495	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1339185	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1934117	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2007062	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2153219	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2744430	0.82[ASN][1000 genomes]
rs2789493	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2789495	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2789496	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2789498	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2789501	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3765290	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs475681	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4897125	0.81[ASN][1000 genomes]
rs512685	0.81[EUR][1000 genomes]
rs556775	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs587155	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62441728	0.82[EUR][1000 genomes]
rs632360	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs634440	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs656461	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs664951	0.84[EUR][1000 genomes]
rs760897	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs909793	0.83[EUR][1000 genomes]
rs9377218	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3355637	chr6:149769659-149774457	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149762600-149770800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:149762800-149771000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:149763200-149771000	Weak transcription	Fetal Intestine Small	intestine
4	chr6:149763200-149771400	Weak transcription	Pancreas	Pancrea
5	chr6:149764800-149771400	Weak transcription	Spleen	Spleen
6	chr6:149765200-149771400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:149766000-149771400	Weak transcription	Right Atrium	heart
8	chr6:149766200-149771000	Weak transcription	GM12878-XiMat	blood
9	chr6:149766200-149771200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:149766600-149773000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:149766800-149771000	Weak transcription	Fetal Heart	heart
12	chr6:149766800-149771400	Weak transcription	Left Ventricle	heart
13	chr6:149766800-149771600	Weak transcription	Lung	lung
14	chr6:149767400-149772800	Weak transcription	HepG2	liver
15	chr6:149768400-149771600	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr6:149768400-149779400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr6:149768600-149771600	Weak transcription	Gastric	stomach
18	chr6:149769600-149771400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:149769600-149782800	Strong transcription	Primary B cells from peripheral blood	blood
20	chr6:149769600-149787200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:149769800-149771400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr6:149769800-149779800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:149770000-149773000	Weak transcription	Primary B cells from cord blood	blood
24	chr6:149770000-149779600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:149770000-149785200	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:149770400-149771400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:149770400-149771600	Weak transcription	Esophagus	oesophagus

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