Variant report

Variant	rs587155
Chromosome Location	chr6:149776763-149776764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149769726..149773853-chr6:149775332..149778151,3	K562	blood:

Variant related genes	Relation type
ENSG00000178199	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1001242	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1074495	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1339185	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1934117	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2007062	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2153219	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2744430	0.90[ASN][1000 genomes]
rs2789493	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2789495	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2789496	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2789498	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2789501	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3765290	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs475681	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4897125	0.82[ASN][1000 genomes]
rs512685	0.92[EUR][1000 genomes]
rs556775	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62441728	0.94[EUR][1000 genomes]
rs632360	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs634440	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs656461	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs664951	0.96[EUR][1000 genomes]
rs760897	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs805027	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs909793	0.95[EUR][1000 genomes]
rs9377218	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149768400-149779400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:149769600-149782800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr6:149769600-149787200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:149769800-149779800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:149770000-149779600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:149770000-149785200	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:149771600-149778000	Weak transcription	GM12878-XiMat	blood
8	chr6:149772000-149788800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:149772600-149779400	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr6:149772600-149787000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:149773000-149776800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:149773000-149778200	Weak transcription	Thymus	Thymus
13	chr6:149773000-149779600	Weak transcription	Primary T cells from cord blood	blood
14	chr6:149773000-149783400	Strong transcription	Primary B cells from cord blood	blood
15	chr6:149773400-149777000	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr6:149773600-149778400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:149774000-149777000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:149774600-149776800	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr6:149774600-149777000	Bivalent Enhancer	Fetal Stomach	stomach
20	chr6:149774800-149776800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:149774800-149776800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:149774800-149776800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:149774800-149776800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:149774800-149776800	Enhancers	Placenta	Placenta
25	chr6:149775000-149776800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:149775000-149776800	Enhancers	Brain Substantia Nigra	brain
27	chr6:149775000-149776800	Enhancers	Esophagus	oesophagus
28	chr6:149775000-149776800	Enhancers	Pancreas	Pancrea
29	chr6:149775000-149777000	Enhancers	Psoas Muscle	Psoas
30	chr6:149775000-149777000	Enhancers	Right Atrium	heart
31	chr6:149775000-149777200	Enhancers	Left Ventricle	heart
32	chr6:149775000-149777200	Enhancers	Right Ventricle	heart
33	chr6:149775200-149776800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:149775200-149776800	Genic enhancers	Spleen	Spleen
35	chr6:149775400-149776800	Enhancers	Rectal Smooth Muscle	rectum
36	chr6:149775400-149777200	Enhancers	Fetal Heart	heart
37	chr6:149775600-149776800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:149775600-149776800	Enhancers	Stomach Mucosa	stomach
39	chr6:149775600-149777000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:149775600-149779600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr6:149775800-149776800	Enhancers	Adipose Nuclei	Adipose
42	chr6:149775800-149776800	Enhancers	Brain Hippocampus Middle	brain
43	chr6:149775800-149778000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr6:149775800-149780800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:149776000-149778200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr6:149776000-149780600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:149776200-149776800	Enhancers	Colon Smooth Muscle	Colon
48	chr6:149776200-149776800	Strong transcription	Fetal Intestine Small	intestine
49	chr6:149776200-149776800	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr6:149776200-149776800	Enhancers	Skeletal Muscle Female	skeletal muscle

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