Variant report

Variant	rs664951
Chromosome Location	chr6:149761487-149761488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1001242	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1074495	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1339185	0.90[EUR][1000 genomes]
rs1934117	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2007062	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2153219	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2179367	0.84[ASN][1000 genomes]
rs2262617	0.84[ASN][1000 genomes]
rs2744431	0.81[AFR][1000 genomes]
rs2789493	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2789495	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2789496	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2789498	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2789501	0.90[EUR][1000 genomes]
rs3765290	0.95[EUR][1000 genomes]
rs475681	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4895789	0.82[ASN][1000 genomes]
rs4897124	0.82[ASN][1000 genomes]
rs512685	0.88[EUR][1000 genomes]
rs556775	0.89[EUR][1000 genomes]
rs587155	0.96[EUR][1000 genomes]
rs62441728	0.89[EUR][1000 genomes]
rs632360	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs634440	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs656461	0.90[EUR][1000 genomes]
rs674919	0.81[AFR][1000 genomes]
rs760897	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs805027	0.84[EUR][1000 genomes]
rs909793	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9377217	0.81[AFR][1000 genomes]
rs9377218	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149746800-149762000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:149749800-149764400	Weak transcription	Right Atrium	heart
3	chr6:149753400-149762200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:149753400-149762800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:149753400-149770000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:149753600-149762200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:149753600-149768400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:149753600-149769600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:149754400-149761800	Weak transcription	Fetal Thymus	thymus
10	chr6:149757000-149761800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:149760600-149762200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:149760600-149766600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:149760800-149765800	Weak transcription	GM12878-XiMat	blood
14	chr6:149761200-149762400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links