Variant report

Variant	rs9375967
Chromosome Location	chr6:133834491-133834492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs212764	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs212778	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs509453	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs523571	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs611186	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs643202	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6911807	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886681	chr6:133833284-133869617	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133821800-133835600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:133823200-133869600	Weak transcription	Psoas Muscle	Psoas
3	chr6:133824200-133854200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:133824400-133837400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:133824400-133854800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:133824400-133861600	Weak transcription	Ovary	ovary
7	chr6:133824800-133835800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:133825600-133857200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:133826400-133844800	Weak transcription	Fetal Kidney	kidney
10	chr6:133826600-133862400	Weak transcription	Fetal Lung	lung
11	chr6:133828800-133836800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:133831800-133836200	Weak transcription	A549	lung
13	chr6:133832600-133836800	Strong transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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