Variant report

Variant	rs9376483
Chromosome Location	chr6:140311241-140311242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1102076	0.93[EUR][1000 genomes]
rs1361248	0.93[EUR][1000 genomes]
rs1416288	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4243464	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4895579	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs594560	0.92[EUR][1000 genomes]
rs603321	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs623233	0.94[CEU][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs623331	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs642858	0.93[EUR][1000 genomes]
rs644467	0.92[EUR][1000 genomes]
rs646695	0.93[EUR][1000 genomes]
rs646747	0.93[EUR][1000 genomes]
rs674672	0.93[EUR][1000 genomes]
rs6933684	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9376484	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9403133	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140304200-140312000	Weak transcription	Fetal Brain Male	brain
2	chr6:140304800-140311800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:140305000-140311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:140305600-140317200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:140305800-140311400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:140305800-140312000	Weak transcription	HSMM	muscle
7	chr6:140305800-140312200	Weak transcription	Ovary	ovary
8	chr6:140305800-140312200	Weak transcription	HSMMtube	muscle
9	chr6:140306200-140312400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:140308600-140311800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:140309600-140312200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:140310400-140311400	Weak transcription	NHLF	lung
13	chr6:140310800-140312200	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr6:140311000-140311600	Enhancers	Placenta	Placenta
15	chr6:140311000-140312200	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr6:140311000-140312600	Enhancers	Fetal Intestine Large	intestine
17	chr6:140311000-140312800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr6:140311200-140312000	Enhancers	Adipose Nuclei	Adipose
19	chr6:140311200-140312000	Weak transcription	Fetal Kidney	kidney
20	chr6:140311200-140312000	Weak transcription	NHDF-Ad	bronchial
21	chr6:140311200-140312200	Enhancers	Osteobl	bone
22	chr6:140311200-140312800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:140311200-140312800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:140311200-140312800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:140311200-140312800	Enhancers	Fetal Lung	lung
26	chr6:140311200-140312800	Enhancers	Rectal Smooth Muscle	rectum

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