Variant report

Variant	rs9403133
Chromosome Location	chr6:140301947-140301948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140296686..140298552-chr6:140300622..140302808,2	K562	blood:
2	chr6:139693406..139696942-chr6:140299260..140302508,7	MCF-7	breast:
3	chr6:139694274..139697260-chr6:140301652..140304164,2	MCF-7	breast:
4	chr6:140287936..140290734-chr6:140300872..140302631,2	K562	blood:
5	chr6:140299794..140302085-chr6:140302801..140306484,3	K562	blood:
6	chr6:139695460..139698700-chr6:140298901..140302123,4	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1102076	0.87[EUR][1000 genomes]
rs1361248	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1416288	0.84[EUR][1000 genomes]
rs4895579	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs594560	0.85[EUR][1000 genomes]
rs603321	0.85[EUR][1000 genomes]
rs623233	0.83[EUR][1000 genomes]
rs623331	0.85[EUR][1000 genomes]
rs642858	0.87[EUR][1000 genomes]
rs644467	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs646695	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs646747	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs674672	0.87[EUR][1000 genomes]
rs6933684	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9376483	0.82[EUR][1000 genomes]
rs9376484	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140291600-140302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:140292600-140306000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:140295200-140303000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:140295400-140302000	Weak transcription	Adipose Nuclei	Adipose
5	chr6:140295400-140302800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:140295400-140303000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:140295600-140302000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:140295600-140302600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:140295600-140303400	Weak transcription	Right Atrium	heart
10	chr6:140296400-140302600	Weak transcription	Fetal Lung	lung
11	chr6:140297400-140305800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:140298200-140303000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:140298200-140303000	Weak transcription	Pancreas	Pancrea
14	chr6:140298200-140305600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:140298200-140306200	Enhancers	Hela-S3	cervix
16	chr6:140298800-140305800	Enhancers	Osteobl	bone
17	chr6:140298800-140306000	Enhancers	NHLF	lung
18	chr6:140299200-140302000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:140299400-140302600	Weak transcription	Esophagus	oesophagus
20	chr6:140299400-140302800	Weak transcription	HUVEC	blood vessel
21	chr6:140299400-140303000	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:140299400-140303400	Weak transcription	Small Intestine	intestine
23	chr6:140299600-140302000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:140299600-140302000	Weak transcription	NHEK	skin
25	chr6:140299600-140302400	Weak transcription	A549	lung
26	chr6:140299600-140303200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:140299800-140303400	Weak transcription	Liver	Liver
28	chr6:140300400-140305200	Enhancers	Fetal Kidney	kidney
29	chr6:140300400-140305600	Enhancers	Fetal Heart	heart
30	chr6:140300600-140302000	Enhancers	Left Ventricle	heart
31	chr6:140300600-140302000	Enhancers	Psoas Muscle	Psoas
32	chr6:140300600-140303000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:140300600-140303200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:140300600-140304200	Enhancers	K562	blood
35	chr6:140300600-140305600	Enhancers	NH-A	brain
36	chr6:140300600-140305800	Enhancers	HSMM	muscle
37	chr6:140300600-140306600	Enhancers	Placenta	Placenta
38	chr6:140300800-140302600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr6:140300800-140304400	Enhancers	Placenta Amnion	Placenta Amnion
40	chr6:140300800-140305200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:140300800-140305800	Enhancers	HSMMtube	muscle
42	chr6:140301000-140302200	Weak transcription	Fetal Stomach	stomach
43	chr6:140301000-140302600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:140301000-140306200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:140301000-140306200	Enhancers	NHDF-Ad	bronchial
46	chr6:140301200-140302000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:140301200-140302200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr6:140301200-140302400	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:140301200-140302600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:140301400-140302600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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