Variant report

Variant	rs9379971
Chromosome Location	chr6:27259308-27259309
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27258318..27260398-chr6:27469283..27471523,2	K562	blood:
2	chr6:27258451..27260109-chr6:27301059..27302632,2	K562	blood:
3	chr6:27258123..27260982-chr6:27774504..27777198,2	K562	blood:
4	chr6:27258656..27261261-chr6:27270962..27272747,2	K562	blood:
5	chr6:27257414..27260339-chr6:27439402..27443718,5	K562	blood:
6	chr6:27201566..27203350-chr6:27258009..27260418,2	K562	blood:
7	chr6:27144021..27146883-chr6:27258754..27261461,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196747	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000096654	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2893911	1.00[JPT][hapmap]
rs3800319	1.00[JPT][hapmap]
rs9366689	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv883505	chr6:27210614-27300580	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27257800-27259400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:27257800-27259400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
3	chr6:27257800-27259400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr6:27257800-27259600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr6:27257800-27260000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:27258000-27259600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr6:27258000-27260000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:27258000-27261800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr6:27258400-27261200	Weak transcription	HMEC	breast
10	chr6:27258600-27259400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:27258800-27261000	Weak transcription	A549	lung
12	chr6:27259000-27259400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
13	chr6:27259000-27259400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
14	chr6:27259000-27259400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:27259000-27259400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:27259000-27259400	Flanking Bivalent TSS/Enh	HepG2	liver
17	chr6:27259200-27259400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:27259200-27259400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:27259200-27259400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:27259200-27259400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:27259200-27260000	Enhancers	K562	blood
22	chr6:27259200-27261200	Weak transcription	NHEK	skin

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