Variant report
| Variant | rs9366689 |
|---|---|
| Chromosome Location | chr6:27276171-27276172 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:27274352..27276653-chr6:27341401..27344004,2 | K562 | blood: | |
| 2 | chr6:27275752..27278982-chr6:27286043..27289546,5 | K562 | blood: | |
| 3 | chr6:27276042..27278512-chr6:27366738..27369712,2 | K562 | blood: | |
| 4 | chr6:27269186..27270845-chr6:27275769..27278192,2 | K562 | blood: | |
| 5 | chr6:27274897..27277280-chr6:27287686..27289546,3 | K562 | blood: | |
| 6 | chr6:27263474..27265071-chr6:27275388..27277708,2 | K562 | blood: | |
| 7 | chr6:27273565..27277461-chr6:27284741..27287387,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000124613 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs2092114 | 0.87[EUR][1000 genomes] |
| rs2295603 | 0.81[CEU][hapmap] |
| rs2893911 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3800319 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4546474 | 0.81[CEU][hapmap] |
| rs4559087 | 0.96[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs7744605 | 0.87[EUR][1000 genomes] |
| rs7746841 | 0.89[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs7771953 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9368501 | 0.96[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs9379968 | 0.89[CEU][hapmap] |
| rs9379971 | 1.00[JPT][hapmap] |
| rs9379973 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017328 | chr6:27177147-27369588 | Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 3 | nsv883505 | chr6:27210614-27300580 | Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 4 | nsv883506 | chr6:27271343-27288687 | Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9366689 | ZNF391 | cis | Artery Tibial | GTEx |
| rs9366689 | AL022393.7 | cis | Muscle Skeletal | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
