Variant report
| Variant | rs9380041 |
|---|---|
| Chromosome Location | chr6:28013280-28013281 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| OR2B7P | TF binding region |
| ENSG00000187763 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs1015075 | 0.83[AMR][1000 genomes] |
| rs149949 | 0.81[ASN][1000 genomes] |
| rs202906 | 0.81[ASN][1000 genomes] |
| rs904142 | 0.83[AMR][1000 genomes] |
| rs9368537 | 0.83[AMR][1000 genomes] |
| rs9380028 | 0.83[AMR][1000 genomes] |
| rs9380029 | 0.83[AMR][1000 genomes] |
| rs9380030 | 0.83[AMR][1000 genomes] |
| rs9380031 | 0.82[AMR][1000 genomes] |
| rs9380032 | 0.89[AMR][1000 genomes] |
| rs9393882 | 1.00[AFR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022651 | chr6:27864217-28017997 | Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv830619 | chr6:27872302-28062544 | Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| 3 | nsv883513 | chr6:27982152-28033087 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv981052 | chr6:27987196-28024382 | Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
