Variant report

Variant	rs9368537
Chromosome Location	chr6:27879551-27879552
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1015075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1321504	1.00[CEU][hapmap]
rs16893573	1.00[CEU][hapmap]
rs16893601	1.00[CEU][hapmap]
rs175597	0.85[JPT][hapmap]
rs183225	0.85[JPT][hapmap]
rs188015	0.94[ASN][1000 genomes]
rs200466	0.85[JPT][hapmap]
rs200469	0.85[JPT][hapmap]
rs200473	0.85[JPT][hapmap]
rs200479	0.85[JPT][hapmap]
rs200482	0.85[JPT][hapmap]
rs200483	0.85[JPT][hapmap]
rs200484	0.85[JPT][hapmap]
rs200485	0.85[JPT][hapmap]
rs200490	0.85[JPT][hapmap]
rs200501	0.85[JPT][hapmap]
rs200948	0.85[JPT][hapmap]
rs200949	0.85[JPT][hapmap]
rs200953	0.85[JPT][hapmap]
rs200954	0.85[JPT][hapmap]
rs200965	0.85[JPT][hapmap]
rs200968	0.85[JPT][hapmap]
rs200973	0.85[JPT][hapmap]
rs200974	0.82[JPT][hapmap]
rs200975	0.85[JPT][hapmap]
rs200977	0.85[JPT][hapmap]
rs200981	0.85[JPT][hapmap]
rs200989	0.85[JPT][hapmap]
rs200990	0.85[JPT][hapmap]
rs200995	0.85[JPT][hapmap]
rs201002	0.85[JPT][hapmap]
rs2747054	0.85[JPT][hapmap]
rs370155	0.85[JPT][hapmap]
rs401763	0.85[JPT][hapmap]
rs4713122	0.82[JPT][hapmap]
rs666846	0.85[JPT][hapmap]
rs904142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9348779	0.85[JPT][hapmap]
rs9348789	1.00[CEU][hapmap]
rs9357052	0.82[JPT][hapmap]
rs9368535	0.85[JPT][hapmap]
rs9368536	0.85[JPT][hapmap]
rs9380026	0.82[JPT][hapmap]
rs9380028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9380031	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9380032	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9380041	0.83[AMR][1000 genomes]
rs9380045	1.00[CEU][hapmap]
rs9393882	1.00[CEU][hapmap]
rs9468271	1.00[CEU][hapmap]
rs9468275	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
2	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
3	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
4	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
5	nsv1022651	chr6:27864217-28017997	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
6	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27871600-27883200	Weak transcription	Hela-S3	cervix
2	chr6:27879400-27880000	Genic enhancers	K562	blood

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