Variant report

Variant	rs200968
Chromosome Location	chr6:27859568-27859569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:69)
CpG islands
(count:0)
Chromatin interactive
region (count:67)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:69 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:27859355-27863666	GM12878	blood:	n/a	n/a
2	POLR2A	chr6:27857265-27863609	GM12891	blood:	n/a	n/a
3	MAFF	chr6:27859139-27860553	K562	blood:	n/a	n/a
4	POLR2A	chr6:27856971-27863786	K562	blood:	n/a	n/a
5	BCLAF1	chr6:27856983-27867279	K562	blood:	n/a	chr6:27863647-27863660 chr6:27863652-27863661 chr6:27862695-27862704 chr6:27857910-27857919
6	CREB1	chr6:27857839-27860651	K562	blood:	n/a	n/a
7	POLR2A	chr6:27856821-27873085	K562	blood:	n/a	n/a
8	HEY1	chr6:27859423-27863569	HepG2	liver:	n/a	chr6:27863039-27863048 chr6:27863037-27863046
9	ARID3A	chr6:27858975-27859649	K562	blood:	n/a	chr6:27859228-27859244
10	CHD2	chr6:27859112-27861463	K562	blood:	n/a	n/a
11	POLR2A	chr6:27859390-27863552	Hela-S3	cervix:	n/a	n/a
12	BCL3	chr6:27859000-27861526	K562	blood:	n/a	n/a
13	POLR2A	chr6:27859552-27863546	GM12892	blood:	n/a	n/a
14	POLR2A	chr6:27856943-27864721	H1-hESC	embryonic stem cell:	n/a	n/a
15	MEF2A	chr6:27859479-27861546	K562	blood:	n/a	n/a
16	POLR2A	chr6:27859119-27863573	Hela-S3	cervix:	n/a	n/a
17	ATF2	chr6:27857228-27863693	H1-hESC	embryonic stem cell:	n/a	chr6:27863037-27863048
18	RFX5	chr6:27859111-27859590	K562	blood:	n/a	chr6:27859430-27859439
19	POLR2A	chr6:27856997-27864751	H1-hESC	embryonic stem cell:	n/a	n/a
20	CEBPB	chr6:27859371-27859571	A549	lung:	n/a	chr6:27859452-27859465 chr6:27859454-27859465 chr6:27859452-27859465
21	TAF7	chr6:27856262-27863702	H1-hESC	embryonic stem cell:	n/a	n/a
22	POLR2A	chr6:27859543-27863475	GM12892	blood:	n/a	n/a
23	HEY1	chr6:27857544-27863607	K562	blood:	n/a	chr6:27863039-27863048 chr6:27863037-27863046
24	CHD2	chr6:27857359-27861593	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr6:27857279-27863600	K562	blood:	n/a	n/a
26	POLR2A	chr6:27858317-27859604	MCF10A-Er-Src	breast:	n/a	n/a
27	SP4	chr6:27859276-27859642	H1-hESC	embryonic stem cell:	n/a	n/a
28	IRF1	chr6:27859525-27859614	K562	blood:	n/a	n/a
29	POLR2A	chr6:27859150-27864630	K562	blood:	n/a	n/a
30	STAT3	chr6:27859149-27859719	MCF10A-Er-Src	breast:	n/a	chr6:27859199-27859206
31	BCLAF1	chr6:27857478-27863716	K562	blood:	n/a	chr6:27863647-27863660 chr6:27863652-27863661 chr6:27862695-27862704 chr6:27857910-27857919
32	MXI1	chr6:27857204-27863823	SK-N-SH	brain:	n/a	n/a
33	POLR2A	chr6:27857138-27863698	GM12878	blood:	n/a	n/a
34	POLR2A	chr6:27859299-27863621	K562	blood:	n/a	n/a
35	HEY1	chr6:27857159-27865219	K562	blood:	n/a	chr6:27863039-27863048 chr6:27863641-27863656 chr6:27863037-27863046 chr6:27864820-27864829
36	SIN3AK20	chr6:27859430-27863710	MCF-7	breast:	n/a	n/a
37	GATA1	chr6:27857541-27863699	PBDE	blood:	n/a	chr6:27863044-27863054
38	POLR2A	chr6:27857165-27863637	GM12878	blood:	n/a	n/a
39	POLR2A	chr6:27856934-27864217	H1-hESC	embryonic stem cell:	n/a	n/a
40	SIN3AK20	chr6:27859555-27863750	HCT-116	colon:	n/a	n/a
41	POLR2A	chr6:27859368-27863591	HUVEC	blood vessel:	n/a	n/a
42	ELK1	chr6:27859141-27860467	K562	blood:	n/a	n/a
43	NR2F2	chr6:27858749-27861996	K562	blood:	n/a	n/a
44	POLR2A	chr6:27857289-27863607	K562	blood:	n/a	n/a
45	TBL1XR1	chr6:27859107-27861466	K562	blood:	n/a	n/a
46	PML	chr6:27858078-27859605	K562	blood:	n/a	n/a
47	POLR2A	chr6:27859277-27862592	GM12878	blood:	n/a	n/a
48	SIN3AK20	chr6:27859188-27861065	K562	blood:	n/a	n/a
49	MXI1	chr6:27859115-27861458	K562	blood:	n/a	n/a
50	TEAD4	chr6:27859551-27860022	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:67 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:26195849..26201222-chr6:27858647..27864324,7	K562	blood:
2	chr6:27113175..27116376-chr6:27859162..27863702,10	MCF-7	breast:
3	chr6:26030052..26032000-chr6:27859191..27860757,2	MCF-7	breast:
4	chr6:26596161..26598988-chr6:27859036..27860676,2	K562	blood:
5	chr6:27245578..27248207-chr6:27858753..27860256,2	K562	blood:
6	chr12:53471021..53473325-chr6:27859417..27861034,2	K562	blood:
7	chr6:26203030..26208239-chr6:27858574..27863151,12	MCF-7	breast:
8	chr6:26121961..26124186-chr6:27858294..27861024,3	MCF-7	breast:
9	chr6:27858835..27861043-chr6:28141226..28144128,2	K562	blood:
10	chr14:39733752..39736599-chr6:27859439..27860958,2	K562	blood:
11	chr6:27859494..27861769-chr6:28315287..28317995,2	K562	blood:
12	chr6:27858930..27860939-chr6:28090408..28092869,2	MCF-7	breast:
13	chr6:27858707..27861368-chr6:28887784..28890166,2	K562	blood:
14	chr6:26054191..26059059-chr6:27859322..27865313,6	K562	blood:
15	chr6:26032242..26033933-chr6:27858634..27862498,4	MCF-7	breast:
16	chr6:27857994..27864853-chr6:28300493..28305532,13	K562	blood:
17	chr12:69978590..69980112-chr6:27859041..27860945,2	MCF-7	breast:
18	chr6:26214930..26218738-chr6:27859344..27862505,4	MCF-7	breast:
19	chr17:57917479..57925634-chr6:27855402..27862109,9	MCF-7	breast:
20	chr6:27098129..27102708-chr6:27857691..27863156,15	MCF-7	breast:
21	chr1:11967428..11969173-chr6:27857961..27860830,2	K562	blood:
22	chr3:126176468..126178332-chr6:27858908..27860583,2	MCF-7	breast:
23	chr6:26154955..26159424-chr6:27857638..27862895,13	MCF-7	breast:
24	chr6:27099529..27101818-chr6:27857109..27860986,3	MCF-7	breast:
25	chr6:26107231..26108901-chr6:27858333..27860619,2	K562	blood:
26	chr6:26213820..26217915-chr6:27859360..27862633,4	K562	blood:
27	chr12:49523060..49525407-chr6:27859446..27861241,2	K562	blood:
28	chr6:26248843..26252508-chr6:27859565..27863258,4	K562	blood:
29	chr6:27859121..27861068-chr6:28247840..28249566,2	K562	blood:
30	chr17:49241711..49243578-chr6:27859229..27860948,2	MCF-7	breast:
31	chr6:26018945..26024445-chr6:27858774..27864727,7	MCF-7	breast:
32	chr6:27105394..27120060-chr6:27855994..27866393,42	K562	blood:
33	chr6:26197637..26200453-chr6:27859195..27862304,3	MCF-7	breast:
34	chr6:26211090..26218818-chr6:27857037..27863909,13	K562	blood:
35	chr6:27858159..27860842-chr9:130740925..130743233,2	MCF-7	breast:
36	chr6:26195787..26199567-chr6:27858679..27862629,4	MCF-7	breast:
37	chr6:26270273..26274919-chr6:27857077..27861037,6	MCF-7	breast:
38	chr6:27859225..27860749-chr6:28117947..28120054,2	K562	blood:
39	chr6:27858753..27860942-chr9:95086192..95088682,2	K562	blood:
40	chr12:69998613..70000144-chr6:27858664..27860434,2	K562	blood:
41	chr6:26283604..26286375-chr6:27859105..27861545,3	K562	blood:
42	chr6:26122096..26124580-chr6:27856723..27859571,3	K562	blood:
43	chr6:27857150..27860070-chr6:28191777..28193436,2	K562	blood:
44	chr6:27859494..27863644-chr6:28315287..28317995,4	K562	blood:
45	chr17:55054775..55057118-chr6:27858290..27861016,2	MCF-7	breast:
46	chr6:27857690..27865363-chr6:28300493..28306970,14	K562	blood:
47	chr6:27096288..27105112-chr6:27855525..27865082,32	K562	blood:
48	chr6:27857955..27860857-chr6:28129284..28131805,2	K562	blood:
49	chr6:26019933..26022464-chr6:27857272..27860270,2	MCF-7	breast:
50	chr6:27109893..27116877-chr6:27855936..27864238,12	MCF-7	breast:

No data

Variant related genes	Relation type
HIST1H3J	TF binding region
HIST1H2BO	TF binding region
ENSG00000180596	Chromatin interaction
ENSG00000123416	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000143570	Chromatin interaction
ENSG00000204713	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000196812	Chromatin interaction
ENSG00000218690	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000256018	Chromatin interaction
ENSG00000188312	Chromatin interaction
ENSG00000256316	Chromatin interaction
ENSG00000197459	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000258017	Chromatin interaction
ENSG00000166226	Chromatin interaction
ENSG00000150527	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000158691	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000264405	Chromatin interaction
ENSG00000167106	Chromatin interaction
ENSG00000258941	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000243678	Chromatin interaction
ENSG00000137338	Chromatin interaction
ENSG00000269781	Chromatin interaction
ENSG00000269293	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000216901	Chromatin interaction
ENSG00000226314	Chromatin interaction
ENSG00000143578	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000167778	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000112812	Chromatin interaction
ENSG00000198518	Chromatin interaction
ENSG00000198000	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000121064	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000216331	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1015075	0.85[JPT][hapmap]
rs12174918	0.82[ASN][1000 genomes]
rs16867962	1.00[CHB][hapmap]
rs169287	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs175597	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.94[YRI][hapmap];0.89[ASN][1000 genomes]
rs17693877	1.00[CHB][hapmap]
rs183225	1.00[JPT][hapmap]
rs200466	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs200469	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs200473	1.00[JPT][hapmap]
rs200479	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs200481	1.00[CHD][hapmap];0.80[ASN][1000 genomes]
rs200482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs200483	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.82[ASN][1000 genomes]
rs200484	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.81[MKK][hapmap]
rs200485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs200488	0.89[ASN][1000 genomes]
rs200489	0.89[ASN][1000 genomes]
rs200490	0.81[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs200497	0.86[ASN][1000 genomes]
rs200498	0.84[ASN][1000 genomes]
rs200499	0.82[ASN][1000 genomes]
rs200501	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.85[ASN][1000 genomes]
rs200948	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap];0.93[ASN][1000 genomes]
rs200949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs200950	0.93[ASN][1000 genomes]
rs200952	0.93[ASN][1000 genomes]
rs200953	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs200954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[ASN][1000 genomes]
rs200955	0.81[MKK][hapmap]
rs200959	0.81[MKK][hapmap]
rs200964	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs200965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200966	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs200973	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs200974	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs200976	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs200977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs200979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200980	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs200981	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs200983	0.89[ASN][1000 genomes]
rs200989	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.94[YRI][hapmap];0.89[ASN][1000 genomes]
rs200990	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs200992	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs200995	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs200996	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs201002	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs2277104	0.86[ASN][1000 genomes]
rs2394001	0.82[ASN][1000 genomes]
rs2747054	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.87[ASN][1000 genomes]
rs34295134	0.89[ASN][1000 genomes]
rs36108923	0.89[ASN][1000 genomes]
rs370155	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.82[ASN][1000 genomes]
rs390764	0.87[ASN][1000 genomes]
rs401754	0.87[ASN][1000 genomes]
rs401763	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[MKK][hapmap];0.84[ASN][1000 genomes]
rs4713122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4713124	0.82[ASN][1000 genomes]
rs4713127	0.95[ASN][1000 genomes]
rs483143	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs493161	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs494887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557042	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56870390	0.89[ASN][1000 genomes]
rs59015666	0.82[ASN][1000 genomes]
rs666846	1.00[JPT][hapmap]
rs904142	0.85[JPT][hapmap]
rs9348779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9357052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9368531	0.87[ASN][1000 genomes]
rs9368534	0.86[ASN][1000 genomes]
rs9368535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9368536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9368537	0.85[JPT][hapmap]
rs9380018	0.80[ASN][1000 genomes]
rs9380026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9380028	0.85[JPT][hapmap]
rs9380030	0.85[JPT][hapmap]
rs9393854	1.00[CHB][hapmap]
rs9393858	0.87[ASN][1000 genomes]
rs9393862	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
3	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
4	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
5	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
7	nsv601209	chr6:27849676-27869321	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	194 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs200968	ZNF192	cis	cerebellum	SCAN
rs200968	ZNF204P	cis	parietal	SCAN
rs200968	ZNF187	cis	parietal	SCAN
rs200968	HIST1H2BC	cis	parietal	SCAN
rs200968	ZNF192	cis	parietal	SCAN
rs200968	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs200968	HIST1H4J	cis	lymphoblastoid	seeQTL
rs200968	ZKSCAN3	cis	parietal	SCAN
rs200968	AL022393.7	cis	Muscle Skeletal	GTEx
rs200968	ZNF323	cis	parietal	SCAN
rs200968	Hs.158943	cis	multi-tissue	Pritchard
rs200968	BTN2A1	cis	parietal	SCAN
rs200968	LRRC16A	cis	parietal	SCAN
rs200968	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs200968	ZSCAN23	cis	cerebellum	SCAN
rs200968	BTN3A3	cis	cerebellum	SCAN

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27857000-27863400	Active TSS	Thymus	Thymus
2	chr6:27857000-27863800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:27857200-27863800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:27857200-27864000	Active TSS	H9 Cell Line	embryonic stem cell
5	chr6:27857200-27864000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:27857200-27864000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:27857400-27860000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:27857400-27864000	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:27857400-27864400	Active TSS	H1 Cell Line	embryonic stem cell
10	chr6:27857400-27864400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:27857600-27859600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr6:27857600-27861000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:27857600-27864000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:27857800-27861000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:27857800-27863600	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr6:27857800-27863800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:27857800-27864000	Active TSS	A549	lung
18	chr6:27858000-27860200	Active TSS	Fetal Brain Female	brain
19	chr6:27858000-27860800	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr6:27858000-27863600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:27858000-27863600	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:27858000-27863600	Active TSS	Fetal Lung	lung
23	chr6:27858000-27864000	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr6:27858000-27864000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:27858200-27863600	Active TSS	Fetal Intestine Large	intestine
26	chr6:27858200-27863800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:27858200-27863800	Active TSS	Brain Germinal Matrix	brain
28	chr6:27858200-27864000	Active TSS	NHLF	lung
29	chr6:27858200-27864200	Active TSS	Fetal Kidney	kidney
30	chr6:27858400-27859600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:27858400-27859800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:27858400-27860000	Active TSS	Placenta	Placenta
33	chr6:27858400-27863600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:27858400-27863600	Active TSS	NH-A	brain
35	chr6:27858400-27863800	Active TSS	NHDF-Ad	bronchial
36	chr6:27858400-27864200	Active TSS	K562	blood
37	chr6:27858600-27859600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:27858600-27859600	Active TSS	Fetal Muscle Trunk	muscle
39	chr6:27858600-27859800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:27858600-27859800	Weak transcription	Small Intestine	intestine
41	chr6:27858600-27860000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:27858600-27860200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr6:27858600-27860200	Weak transcription	Liver	Liver
44	chr6:27858600-27860200	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr6:27858600-27860200	Active TSS	HMEC	breast
46	chr6:27858600-27860400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:27858600-27860400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:27858600-27860400	Weak transcription	Pancreas	Pancrea
49	chr6:27858600-27860400	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr6:27858600-27860400	Weak transcription	Stomach Mucosa	stomach

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