Variant report

Variant	rs12174918
Chromosome Location	chr6:27749174-27749175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs16867962	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs169287	0.80[ASN][1000 genomes]
rs175597	0.93[ASN][1000 genomes]
rs17693877	0.84[ASN][1000 genomes]
rs183225	0.91[ASN][1000 genomes]
rs200466	0.91[ASN][1000 genomes]
rs200469	0.90[ASN][1000 genomes]
rs200471	0.91[ASN][1000 genomes]
rs200473	0.91[ASN][1000 genomes]
rs200478	0.91[ASN][1000 genomes]
rs200479	0.91[ASN][1000 genomes]
rs200481	0.98[ASN][1000 genomes]
rs200482	0.98[ASN][1000 genomes]
rs200483	1.00[ASN][1000 genomes]
rs200484	0.93[ASN][1000 genomes]
rs200485	0.98[ASN][1000 genomes]
rs200488	0.93[ASN][1000 genomes]
rs200489	0.93[ASN][1000 genomes]
rs200490	0.87[ASN][1000 genomes]
rs200497	0.91[ASN][1000 genomes]
rs200498	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs200499	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs200501	0.93[ASN][1000 genomes]
rs200948	0.89[ASN][1000 genomes]
rs200949	0.87[ASN][1000 genomes]
rs200950	0.89[ASN][1000 genomes]
rs200952	0.89[ASN][1000 genomes]
rs200953	0.87[ASN][1000 genomes]
rs200954	0.89[ASN][1000 genomes]
rs200964	0.80[ASN][1000 genomes]
rs200965	0.82[ASN][1000 genomes]
rs200966	0.80[ASN][1000 genomes]
rs200968	0.82[ASN][1000 genomes]
rs200973	0.80[ASN][1000 genomes]
rs200974	0.82[ASN][1000 genomes]
rs200976	0.80[ASN][1000 genomes]
rs200977	0.86[ASN][1000 genomes]
rs200979	0.82[ASN][1000 genomes]
rs200980	0.82[ASN][1000 genomes]
rs200981	0.87[ASN][1000 genomes]
rs200983	0.93[ASN][1000 genomes]
rs200989	0.93[ASN][1000 genomes]
rs200990	0.91[ASN][1000 genomes]
rs200992	0.91[ASN][1000 genomes]
rs200995	0.93[ASN][1000 genomes]
rs200996	0.93[ASN][1000 genomes]
rs201002	0.91[ASN][1000 genomes]
rs2277104	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2394001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2747054	0.95[ASN][1000 genomes]
rs34295134	0.93[ASN][1000 genomes]
rs36108923	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs370155	0.91[ASN][1000 genomes]
rs390764	0.95[ASN][1000 genomes]
rs401754	0.95[ASN][1000 genomes]
rs401763	0.93[ASN][1000 genomes]
rs4236045	0.82[ASN][1000 genomes]
rs4711158	0.88[AMR][1000 genomes]
rs4711161	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713116	0.80[AMR][1000 genomes]
rs4713117	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713124	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713127	0.86[ASN][1000 genomes]
rs480699	0.84[ASN][1000 genomes]
rs493161	0.86[ASN][1000 genomes]
rs494887	0.82[ASN][1000 genomes]
rs557042	0.86[ASN][1000 genomes]
rs56870390	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56911191	0.81[AMR][1000 genomes]
rs58727692	0.88[AMR][1000 genomes]
rs59015666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs666846	0.91[ASN][1000 genomes]
rs9348779	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9357052	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9368516	0.80[AMR][1000 genomes]
rs9368531	0.95[ASN][1000 genomes]
rs9368534	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9368535	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9368536	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9379988	0.88[AMR][1000 genomes]
rs9379989	0.88[AMR][1000 genomes]
rs9379991	0.88[AMR][1000 genomes]
rs9379993	0.80[AMR][1000 genomes]
rs9379997	0.80[AMR][1000 genomes]
rs9380009	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380013	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380014	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380015	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9380018	0.98[ASN][1000 genomes]
rs9380026	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9393825	0.88[AMR][1000 genomes]
rs9393845	0.88[AMR][1000 genomes]
rs9393855	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393858	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9393862	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv1017057	chr6:27745777-27789683	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	125 gene(s)	inside rSNPs	diseases
7	nsv981120	chr6:27746371-27751747	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	n/a
8	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27743600-27750000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:27745600-27753200	Weak transcription	HepG2	liver
3	chr6:27747000-27750000	Weak transcription	K562	blood
4	chr6:27748800-27754600	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links