Variant report

Variant	rs17693877
Chromosome Location	chr6:27707046-27707047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:27707029-27707078	A549	lung:	n/a	n/a
2	MTA3	chr6:27705675-27707160	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000216915	TF binding region

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1010261	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs12174918	0.84[ASN][1000 genomes]
rs16867962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[ASN][1000 genomes]
rs175597	1.00[CHB][hapmap]
rs200481	0.82[ASN][1000 genomes]
rs200482	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs200483	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs200484	1.00[CHB][hapmap]
rs200485	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs200490	1.00[CHB][hapmap]
rs200501	1.00[CHB][hapmap]
rs200948	1.00[CHB][hapmap]
rs200949	1.00[CHB][hapmap]
rs200953	1.00[CHB][hapmap]
rs200954	1.00[CHB][hapmap]
rs200965	1.00[CHB][hapmap]
rs200968	1.00[CHB][hapmap]
rs200973	1.00[CHB][hapmap]
rs200974	1.00[CHB][hapmap]
rs200975	1.00[CHB][hapmap]
rs200977	1.00[CHB][hapmap]
rs200981	1.00[CHB][hapmap]
rs200989	1.00[CHB][hapmap]
rs200990	1.00[CHB][hapmap]
rs200995	1.00[CHB][hapmap]
rs201002	1.00[CHB][hapmap]
rs2394001	0.84[ASN][1000 genomes]
rs2747054	1.00[CHB][hapmap]
rs370155	1.00[CHB][hapmap]
rs401763	1.00[CHB][hapmap]
rs4236045	0.93[ASN][1000 genomes]
rs4713117	0.84[ASN][1000 genomes]
rs4713122	1.00[CHB][hapmap];0.83[YRI][hapmap];0.84[ASN][1000 genomes]
rs4713124	0.84[ASN][1000 genomes]
rs59015666	0.84[ASN][1000 genomes]
rs72845058	0.86[EUR][1000 genomes]
rs72845060	0.86[EUR][1000 genomes]
rs72845061	0.84[EUR][1000 genomes]
rs72845062	0.86[EUR][1000 genomes]
rs72845064	0.86[EUR][1000 genomes]
rs72845068	0.87[EUR][1000 genomes]
rs72845896	0.95[EUR][1000 genomes]
rs72847322	0.95[EUR][1000 genomes]
rs72847323	0.95[EUR][1000 genomes]
rs72847329	0.91[EUR][1000 genomes]
rs72847332	0.82[EUR][1000 genomes]
rs72847343	0.82[EUR][1000 genomes]
rs72847348	0.82[EUR][1000 genomes]
rs72847349	0.82[EUR][1000 genomes]
rs9348779	1.00[CHB][hapmap]
rs9357052	1.00[CHB][hapmap]
rs9368516	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs9368535	1.00[CHB][hapmap]
rs9368536	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9380009	0.88[ASN][1000 genomes]
rs9380013	0.93[ASN][1000 genomes]
rs9380014	0.93[ASN][1000 genomes]
rs9380015	0.93[ASN][1000 genomes]
rs9380018	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9380026	1.00[CHB][hapmap]
rs9393829	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs9393845	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs9393854	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[YRI][hapmap]
rs9468183	0.88[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv970372	chr6:27695204-27708579	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv981370	chr6:27696520-27708579	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27705400-27707400	Active TSS	A549	lung
2	chr6:27705600-27710400	Weak transcription	K562	blood
3	chr6:27705800-27707200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:27706800-27707200	Enhancers	Placenta	Placenta
5	chr6:27707000-27707200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:27707000-27714600	Weak transcription	GM12878-XiMat	blood

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