Variant report

Variant	rs9380014
Chromosome Location	chr6:27693487-27693488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27687897..27691780-chr6:27691811..27694513,3	MCF-7	breast:
2	chr6:27687163..27689366-chr6:27693364..27696456,4	K562	blood:
3	chr6:27692126..27696307-chr6:27696693..27700869,4	K562	blood:
4	chr6:27655233..27656837-chr6:27693147..27694855,2	K562	blood:
5	chr6:27251230..27254173-chr6:27693136..27695463,2	K562	blood:
6	chr6:27655233..27657099-chr6:27693355..27695720,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1010261	0.86[ASN][1000 genomes]
rs12174918	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16867962	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17693877	0.93[ASN][1000 genomes]
rs200481	0.80[ASN][1000 genomes]
rs200482	0.80[ASN][1000 genomes]
rs200483	0.82[ASN][1000 genomes]
rs200485	0.80[ASN][1000 genomes]
rs2277104	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2394001	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36108923	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4236045	1.00[ASN][1000 genomes]
rs4711158	0.84[AMR][1000 genomes]
rs4711161	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713116	0.82[ASN][1000 genomes]
rs4713117	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4713122	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713124	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56870390	1.00[EUR][1000 genomes]
rs58322250	0.82[ASN][1000 genomes]
rs58727692	0.84[AMR][1000 genomes]
rs59015666	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7742887	0.82[ASN][1000 genomes]
rs7773905	0.82[ASN][1000 genomes]
rs9295738	0.86[ASN][1000 genomes]
rs9348779	1.00[EUR][1000 genomes]
rs9357041	0.84[AMR][1000 genomes]
rs9357052	1.00[EUR][1000 genomes]
rs9368515	0.84[AMR][1000 genomes]
rs9368534	1.00[EUR][1000 genomes]
rs9368535	1.00[EUR][1000 genomes]
rs9368536	1.00[EUR][1000 genomes]
rs9379988	0.91[AMR][1000 genomes]
rs9379989	0.84[AMR][1000 genomes]
rs9379991	0.84[AMR][1000 genomes]
rs9380009	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380013	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380015	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380018	0.80[ASN][1000 genomes]
rs9380026	1.00[EUR][1000 genomes]
rs9393825	0.91[AMR][1000 genomes]
rs9393829	0.83[AMR][1000 genomes]
rs9393845	0.84[AMR][1000 genomes]
rs9393855	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393862	1.00[EUR][1000 genomes]
rs9468183	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27689600-27694200	Weak transcription	A549	lung
2	chr6:27690200-27694400	Weak transcription	K562	blood
3	chr6:27693400-27694000	Enhancers	HepG2	liver

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