Variant report

Variant	rs9380015
Chromosome Location	chr6:27694459-27694460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27694126..27696434-chr6:27711146..27712696,2	K562	blood:
2	chr6:27687897..27691780-chr6:27691811..27694513,3	MCF-7	breast:
3	chr6:27687163..27689366-chr6:27693364..27696456,4	K562	blood:
4	chr6:27692126..27696307-chr6:27696693..27700869,4	K562	blood:
5	chr6:27655233..27656837-chr6:27693147..27694855,2	K562	blood:
6	chr6:27251230..27254173-chr6:27693136..27695463,2	K562	blood:
7	chr6:27655233..27657099-chr6:27693355..27695720,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1010261	1.00[CEU][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs12174918	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16867962	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs175597	0.88[CHB][hapmap]
rs17693877	0.88[CHB][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs200481	0.80[ASN][1000 genomes]
rs200482	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs200483	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs200484	0.88[CHB][hapmap]
rs200485	0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs200490	0.88[CHB][hapmap]
rs200501	0.88[CHB][hapmap]
rs200948	0.88[CHB][hapmap]
rs200949	0.88[CHB][hapmap]
rs200953	0.88[CHB][hapmap]
rs200954	0.88[CHB][hapmap]
rs200965	0.88[CHB][hapmap]
rs200968	0.88[CHB][hapmap]
rs200973	0.88[CHB][hapmap]
rs200974	0.88[CHB][hapmap]
rs200975	0.88[CHB][hapmap]
rs200977	0.88[CHB][hapmap]
rs200981	0.88[CHB][hapmap]
rs200989	0.88[CHB][hapmap]
rs200990	0.88[CHB][hapmap]
rs200995	0.88[CHB][hapmap]
rs201002	0.88[CHB][hapmap]
rs2277104	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2394001	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2747054	0.88[CHB][hapmap]
rs36108923	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs370155	0.88[CHB][hapmap]
rs401763	1.00[CHB][hapmap]
rs4236045	1.00[ASN][1000 genomes]
rs4711158	0.88[AMR][1000 genomes]
rs4711161	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713116	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4713117	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4713122	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4713124	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56870390	1.00[EUR][1000 genomes]
rs56911191	0.81[AMR][1000 genomes]
rs58322250	0.82[ASN][1000 genomes]
rs58727692	0.88[AMR][1000 genomes]
rs59015666	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7742887	0.82[ASN][1000 genomes]
rs7773905	0.82[ASN][1000 genomes]
rs9295738	0.86[ASN][1000 genomes]
rs9348779	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[EUR][1000 genomes]
rs9357041	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs9357052	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[EUR][1000 genomes]
rs9368515	0.88[AMR][1000 genomes]
rs9368516	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes]
rs9368534	1.00[EUR][1000 genomes]
rs9368535	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[EUR][1000 genomes]
rs9368536	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9379987	0.81[AMR][1000 genomes]
rs9379988	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs9379989	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs9379991	0.88[AMR][1000 genomes]
rs9379993	0.80[AMR][1000 genomes]
rs9379997	0.80[AMR][1000 genomes]
rs9380009	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9380013	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380014	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380018	0.80[ASN][1000 genomes]
rs9380026	1.00[EUR][1000 genomes]
rs9393825	0.88[AMR][1000 genomes]
rs9393829	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs9393845	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes]
rs9393854	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap]
rs9393855	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393858	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393862	1.00[EUR][1000 genomes]
rs9468183	0.86[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27694400-27694600	Active TSS	HepG2	liver
2	chr6:27694400-27694800	Enhancers	K562	blood
3	chr6:27694400-27697600	Weak transcription	A549	lung

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