Variant report

Variant	rs4711161
Chromosome Location	chr6:27645837-27645838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27632657..27637879-chr6:27644957..27648332,5	K562	blood:
2	chr6:27634605..27637879-chr6:27644998..27648332,4	K562	blood:
3	chr6:27644939..27650269-chr6:27651814..27657274,7	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1010261	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs12174918	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16867962	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs175597	0.85[CHB][hapmap]
rs17693877	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs200482	0.85[CHB][hapmap]
rs200483	0.85[CHB][hapmap]
rs200484	0.85[CHB][hapmap]
rs200485	0.85[CHB][hapmap]
rs200490	0.85[CHB][hapmap]
rs200501	0.85[CHB][hapmap]
rs200948	0.85[CHB][hapmap]
rs200949	0.85[CHB][hapmap]
rs200953	0.85[CHB][hapmap]
rs200954	0.85[CHB][hapmap]
rs200981	0.85[CHB][hapmap]
rs200989	0.85[CHB][hapmap]
rs200990	0.85[CHB][hapmap]
rs200995	0.85[CHB][hapmap]
rs201002	0.85[CHB][hapmap]
rs2277104	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2394001	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2747054	0.85[CHB][hapmap]
rs36108923	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs370155	0.85[CHB][hapmap]
rs401763	0.82[CHB][hapmap]
rs4711158	0.91[AMR][1000 genomes]
rs4713116	0.83[AMR][1000 genomes]
rs4713117	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4713122	0.85[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713124	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56870390	1.00[EUR][1000 genomes]
rs56911191	0.84[AMR][1000 genomes]
rs58727692	0.91[AMR][1000 genomes]
rs59015666	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9295738	0.83[ASN][1000 genomes]
rs9348779	0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs9357041	0.91[AMR][1000 genomes]
rs9357052	1.00[EUR][1000 genomes]
rs9368515	0.91[AMR][1000 genomes]
rs9368516	0.85[JPT][hapmap];0.83[AMR][1000 genomes]
rs9368534	1.00[EUR][1000 genomes]
rs9368535	0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs9368536	0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs9379987	0.84[AMR][1000 genomes]
rs9379988	1.00[AMR][1000 genomes]
rs9379989	0.91[AMR][1000 genomes]
rs9379991	0.91[AMR][1000 genomes]
rs9379993	0.83[AMR][1000 genomes]
rs9379997	0.83[AMR][1000 genomes]
rs9380009	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380013	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380014	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380015	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9380026	1.00[EUR][1000 genomes]
rs9393825	1.00[AMR][1000 genomes]
rs9393829	0.85[JPT][hapmap];0.91[AMR][1000 genomes]
rs9393845	0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9393854	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs9393855	1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393858	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9393862	1.00[EUR][1000 genomes]
rs9468183	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv525669	chr6:27623511-27657647	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv883511	chr6:27623511-27660508	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	esv2830157	chr6:27634640-27657647	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv518945	chr6:27634640-27668013	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27640800-27647400	Weak transcription	GM12878-XiMat	blood
2	chr6:27645600-27647000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:27645800-27646600	Enhancers	HepG2	liver

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