Variant report

Variant	rs200973
Chromosome Location	chr6:27858421-27858422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:359)
CpG islands
(count:61)
Chromatin interactive
region (count:39)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:359 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr6:27858077-27858672	GM12878	blood:	n/a	n/a
2	STAT5A	chr6:27857501-27858762	GM12878	blood:	n/a	n/a
3	ELF1	chr6:27858175-27858877	MCF-7	breast:	n/a	n/a
4	TAF1	chr6:27858388-27858702	SK-N-SH	brain:	n/a	n/a
5	ZBTB7A	chr6:27858359-27858601	K562	blood:	n/a	n/a
6	POLR2A	chr6:27857265-27863609	GM12891	blood:	n/a	n/a
7	POLR2A	chr6:27857621-27858782	NB4	blood:	n/a	n/a
8	YY1	chr6:27858190-27858669	GM12891	blood:	n/a	n/a
9	POLR2A	chr6:27857560-27858891	GM12878	blood:	n/a	n/a
10	POLR2A	chr6:27857380-27858870	GM12892	blood:	n/a	n/a
11	TAF1	chr6:27858238-27858791	GM12891	blood:	n/a	n/a
12	TCF7L2	chr6:27857697-27859049	HCT-116	colon:	n/a	n/a
13	EP300	chr6:27858329-27858676	SK-N-SH_RA	brain:	n/a	n/a
14	POLR2A	chr6:27857297-27858919	GM19099	blood:	n/a	n/a
15	YY1	chr6:27858091-27858702	GM12892	blood:	n/a	n/a
16	TBP	chr6:27858381-27858828	GM12878	blood:	n/a	n/a
17	GTF2F1	chr6:27858362-27858862	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr6:27856971-27863786	K562	blood:	n/a	n/a
19	BCLAF1	chr6:27856983-27867279	K562	blood:	n/a	chr6:27863647-27863660 chr6:27863652-27863661 chr6:27862695-27862704 chr6:27857910-27857919
20	CREB1	chr6:27858327-27858666	A549	lung:	n/a	n/a
21	CREB1	chr6:27857839-27860651	K562	blood:	n/a	n/a
22	CBX3	chr6:27857862-27858727	K562	blood:	n/a	n/a
23	ATF2	chr6:27857534-27858764	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr6:27857577-27858710	A549	lung:	n/a	n/a
25	POLR2A	chr6:27856821-27873085	K562	blood:	n/a	n/a
26	GTF2B	chr6:27858366-27858807	K562	blood:	n/a	n/a
27	POLR2A	chr6:27857312-27858906	GM18951	blood:	n/a	n/a
28	PML	chr6:27857682-27858835	MCF-7	breast:	n/a	n/a
29	ZMIZ1	chr6:27858172-27858724	K562	blood:	n/a	n/a
30	POLR2A	chr6:27857203-27859037	MCF-7	breast:	n/a	n/a
31	NFYB	chr6:27858372-27859060	K562	blood:	n/a	chr6:27858647-27858662 chr6:27859045-27859057 chr6:27858649-27858662 chr6:27858651-27858663 chr6:27858650-27858660 chr6:27858648-27858662 chr6:27858647-27858662
32	CTCF	chr6:27858300-27858450	GM12864	blood:	n/a	n/a
33	TAF1	chr6:27858394-27858747	PFSK-1	brain:	n/a	n/a
34	FOXM1	chr6:27857575-27858902	GM12878	blood:	n/a	n/a
35	TAF1	chr6:27858047-27858760	H1-neurons	neurons:	n/a	n/a
36	IRF1	chr6:27858359-27858833	K562	blood:	n/a	n/a
37	PAX5	chr6:27858293-27858672	GM12878	blood:	n/a	n/a
38	NR2F2	chr6:27857471-27858563	K562	blood:	n/a	n/a
39	HMGN3	chr6:27858306-27858885	K562	blood:	n/a	n/a
40	STAT1	chr6:27858232-27858733	GM12878	blood:	n/a	n/a
41	E2F6	chr6:27857884-27858784	A549	lung:	n/a	n/a
42	TAF7	chr6:27858241-27858708	K562	blood:	n/a	n/a
43	TAF1	chr6:27858263-27859123	MCF-7	breast:	n/a	n/a
44	REST	chr6:27857782-27858707	A549	lung:	n/a	chr6:27858599-27858617
45	PBX3	chr6:27858267-27858680	A549	lung:	n/a	n/a
46	EP300	chr6:27857543-27858759	A549	lung:	n/a	n/a
47	CBX3	chr6:27857539-27859119	K562	blood:	n/a	n/a
48	CTCF	chr6:27858166-27858673	GM12878	blood:	n/a	n/a
49	CTCF	chr6:27858419-27858475	MCF-7	breast:	n/a	n/a
50	MYC	chr6:27858295-27858438	HUVEC	blood vessel:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:27858380-27858430	A549	lung:	n/a
2	chr6:27858380-27858430	AG04449	skin:	fetal
3	chr6:27858380-27858430	HMEC	breast:	n/a
4	chr6:27858380-27858430	HCT-116	colon:	n/a
5	chr6:27858380-27858430	HEK293	kidney:	embryo
6	chr6:27858380-27858430	HCF	heart:	n/a
7	chr6:27858380-27858430	Hela-S3	cervix:	n/a
8	chr6:27858380-27858430	PANC-1	pancreas:	n/a
9	chr6:27858380-27858430	SKMC	muscle:	n/a
10	chr6:27858380-27858430	NHDF-neo	bronchial:	n/a
11	chr6:27858380-27858430	HRCEpiC	kidney:	n/a
12	chr6:27858380-27858430	HCM	heart:	n/a
13	chr6:27858380-27858430	Hepatocyte	liver:	n/a
14	chr6:27858380-27858430	NB4	blood:	n/a
15	chr6:27858380-27858430	BJ	skin:	n/a
16	chr6:27858380-27858430	ECC-1	luminal epithelium:	n/a
17	chr6:27858380-27858430	Caco-2	colon:	n/a
18	chr6:27858380-27858430	HPAEpiC	pulmonary alveolar:	n/a
19	chr6:27858380-27858430	HIPEpiC	eye:	n/a
20	chr6:27858380-27858430	GM12892	blood:	n/a
21	chr6:27858380-27858430	Jurkat	blood:	n/a
22	chr6:27858380-27858430	AoSMC	blood vessel:	n/a
23	chr6:27858380-27858430	NHBE	bronchial:	n/a
24	chr6:27858380-27858430	AG09319	gingival:	n/a
25	chr6:27858380-27858430	HepG2	liver:	n/a
26	chr6:27858380-27858430	RPTEC	kidney:	n/a
27	chr6:27858380-27858430	T-47D	breast:	n/a
28	chr6:27858380-27858430	AG10803	skin:	n/a
29	chr6:27858380-27858430	K562	blood:	n/a
30	chr6:27858380-27858430	SAEC	small airway:	n/a
31	chr6:27858380-27858430	ovcar-3	ovarian:	n/a
32	chr6:27858380-27858430	GM19239	blood:	n/a
33	chr6:27858380-27858430	HAEpiC	amniotic membrane:	n/a
34	chr6:27858380-27858430	GM12878	blood:	n/a
35	chr6:27858380-27858430	HEEpiC	esophagus:	n/a
36	chr6:27858380-27858430	IMR90	lung:	fetal
37	chr6:27858380-27858430	GM12891	blood:	n/a
38	chr6:27858380-27858430	CMK	blood:	n/a
39	chr6:27858380-27858430	HRPEpiC	eye:	n/a
40	chr6:27858380-27858430	ProgFib	skin:	n/a
41	chr6:27858380-27858430	SK-N-MC	brain:	n/a
42	chr6:27858380-27858430	H1-hESC	embryonic stem cell:	embryo
43	chr6:27858380-27858430	SK-N-SH_RA	brain:	n/a
44	chr6:27858380-27858430	SK-N-SH	brain:	n/a
45	chr6:27858380-27858430	PFSK-1	brain:	n/a
46	chr6:27858380-27858430	MCF-7	breast:	n/a
47	chr6:27858380-27858430	AG09309	skin:	n/a
48	chr6:27858380-27858430	HCPEpiC	choroid plexus:	n/a
49	chr6:27858380-27858430	NH-A	brain:	n/a
50	chr6:27858380-27858430	HUVEC	blood vessel:	n/a

(count:39 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26199305..26201035-chr6:27856541..27859187,2	K562	blood:
2	chr6:27857706..27858466-chr8:134309427..134310192,2	HCT-116	colon:
3	chr6:27856359..27859269-chr6:28891133..28894008,2	MCF-7	breast:
4	chr6:26121961..26124186-chr6:27858294..27861024,3	MCF-7	breast:
5	chr10:18939570..18941733-chr6:27856904..27858914,2	MCF-7	breast:
6	chr11:32914073..32914891-chr6:27858213..27859098,2	HCT-116	colon:
7	chr17:57923153..57925660-chr6:27857179..27859477,2	MCF-7	breast:
8	chr6:27857994..27864853-chr6:28300493..28305532,13	K562	blood:
9	chr17:57917479..57925634-chr6:27855402..27862109,9	MCF-7	breast:
10	chr6:27098129..27102708-chr6:27857691..27863156,15	MCF-7	breast:
11	chr1:11967428..11969173-chr6:27857961..27860830,2	K562	blood:
12	chr6:26154955..26159424-chr6:27857638..27862895,13	MCF-7	breast:
13	chr6:27099529..27101818-chr6:27857109..27860986,3	MCF-7	breast:
14	chr6:26107231..26108901-chr6:27858333..27860619,2	K562	blood:
15	chr16:2203268..2206220-chr6:27857533..27859088,2	K562	blood:
16	chr6:27105394..27120060-chr6:27855994..27866393,42	K562	blood:
17	chr6:26211090..26218818-chr6:27857037..27863909,13	K562	blood:
18	chr6:27858159..27860842-chr9:130740925..130743233,2	MCF-7	breast:
19	chr6:26270273..26274919-chr6:27857077..27861037,6	MCF-7	breast:
20	chr6:26122096..26124580-chr6:27856723..27859571,3	K562	blood:
21	chr6:27857150..27860070-chr6:28191777..28193436,2	K562	blood:
22	chr17:55054775..55057118-chr6:27858290..27861016,2	MCF-7	breast:
23	chr6:27857690..27865363-chr6:28300493..28306970,14	K562	blood:
24	chr6:27096288..27105112-chr6:27855525..27865082,32	K562	blood:
25	chr6:27857955..27860857-chr6:28129284..28131805,2	K562	blood:
26	chr6:27091519..27093648-chr6:27856699..27858559,2	K562	blood:
27	chr6:26019933..26022464-chr6:27857272..27860270,2	MCF-7	breast:
28	chr6:27109893..27116877-chr6:27855936..27864238,12	MCF-7	breast:
29	chr6:27857864..27860590-chr6:28365932..28368425,2	K562	blood:
30	chr6:27094943..27118570-chr6:27854106..27868030,101	K562	blood:
31	chr6:27858116..27862502-chr6:28047404..28050448,4	K562	blood:
32	chr6:26025653..26028340-chr6:27857674..27861144,4	MCF-7	breast:
33	chr6:27857335..27860257-chr7:6521676..6523586,2	MCF-7	breast:
34	chr6:26024607..26035097-chr6:27857610..27864739,17	K562	blood:
35	chr1:153939194..153941936-chr6:27857839..27860043,2	MCF-7	breast:
36	chr6:27857264..27863272-chr6:28318615..28325449,9	K562	blood:
37	chr6:27856204..27858764-chr6:28323949..28325832,2	K562	blood:
38	chr6:26156518..26158542-chr6:27857561..27859684,2	K562	blood:
39	chr6:27857129..27859629-chr6:28105020..28108475,3	K562	blood:

No data

Variant related genes	Relation type
HIST1H2BO	TF binding region
HIST1H2BO	CpG island
ENSG00000168298	Chromatin interaction
ENSG00000226314	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000131653	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000121064	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000167106	Chromatin interaction
ENSG00000269781	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000241058	Chromatin interaction
ENSG00000204713	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000060749	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000256018	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000158691	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000143570	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000218690	Chromatin interaction
ENSG00000168242	Chromatin interaction
ENSG00000260260	Chromatin interaction
ENSG00000201524	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000143578	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000235109	Chromatin interaction
ENSG00000269293	Chromatin interaction
ENSG00000104419	Chromatin interaction
ENSG00000206630	Chromatin interaction
ENSG00000197409	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1015075	0.85[JPT][hapmap]
rs12174918	0.80[ASN][1000 genomes]
rs16867962	1.00[CHB][hapmap]
rs169287	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs175597	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[YRI][hapmap];0.87[ASN][1000 genomes]
rs17693877	1.00[CHB][hapmap]
rs183225	1.00[JPT][hapmap]
rs200466	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs200469	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs200473	1.00[JPT][hapmap]
rs200479	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs200481	1.00[CHD][hapmap]
rs200482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs200483	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.80[ASN][1000 genomes]
rs200484	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs200485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs200488	0.87[ASN][1000 genomes]
rs200489	0.87[ASN][1000 genomes]
rs200490	0.91[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs200497	0.84[ASN][1000 genomes]
rs200498	0.82[ASN][1000 genomes]
rs200499	0.80[ASN][1000 genomes]
rs200501	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[ASN][1000 genomes]
rs200948	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs200949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs200950	0.91[ASN][1000 genomes]
rs200952	0.91[ASN][1000 genomes]
rs200953	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs200954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[ASN][1000 genomes]
rs200964	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs200965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs200966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs200968	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs200974	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs200975	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs200976	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs200977	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs200979	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs200980	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs200981	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs200983	0.87[ASN][1000 genomes]
rs200989	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[YRI][hapmap];0.87[ASN][1000 genomes]
rs200990	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs200992	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs200995	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs200996	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs201002	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2277104	0.84[ASN][1000 genomes]
rs2394001	0.80[ASN][1000 genomes]
rs2747054	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[ASN][1000 genomes]
rs34295134	0.87[ASN][1000 genomes]
rs36108923	0.87[ASN][1000 genomes]
rs370155	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.85[ASN][1000 genomes]
rs390764	0.85[ASN][1000 genomes]
rs401754	0.85[ASN][1000 genomes]
rs401763	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.82[ASN][1000 genomes]
rs4713122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4713124	0.80[ASN][1000 genomes]
rs4713127	0.93[ASN][1000 genomes]
rs483143	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs493161	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs494887	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs557042	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56870390	0.87[ASN][1000 genomes]
rs59015666	0.80[ASN][1000 genomes]
rs666846	1.00[JPT][hapmap]
rs904142	0.85[JPT][hapmap]
rs9348779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9357052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9368531	0.85[ASN][1000 genomes]
rs9368534	0.84[ASN][1000 genomes]
rs9368535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9368536	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9368537	0.85[JPT][hapmap]
rs9380026	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9380028	0.85[JPT][hapmap]
rs9380030	0.85[JPT][hapmap]
rs9393854	1.00[CHB][hapmap]
rs9393858	0.85[ASN][1000 genomes]
rs9393862	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
3	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
4	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
5	nsv883512	chr6:27748631-27969004	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases
6	nsv601208	chr6:27810626-27969004	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	237 gene(s)	inside rSNPs	diseases
7	nsv601209	chr6:27849676-27869321	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	194 gene(s)	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs200973	ZNF204P	cis	parietal	SCAN
rs200973	BTN3A2///BTN3A3	Cis_chr	lymphoblastoid	RTeQTL
rs200973	BTN3A2	Cis_chr	lymphoblastoid	RTeQTL
rs200973	ZNF192	cis	parietal	SCAN
rs200973	HLA-A	cis	multi-tissue	Pritchard
rs200973	ZSCAN23	cis	cerebellum	SCAN
rs200973	ZNF323	cis	parietal	SCAN
rs200973	ZNF187	cis	parietal	SCAN
rs200973	LRRC16A	cis	parietal	SCAN
rs200973	AL022393.7	cis	Muscle Skeletal	GTEx
rs200973	ZNF192	cis	cerebellum	SCAN
rs200973	BTN2A1	cis	parietal	SCAN
rs200973	ZKSCAN3	cis	parietal	SCAN
rs200973	BTN3A3	cis	cerebellum	SCAN
rs200973	BTN3A2	cis	multi-tissue	Pritchard
rs200973	HIST1H2BC	cis	parietal	SCAN
rs200973	HIST1H4J	cis	lymphoblastoid	seeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27857000-27858600	Flanking Active TSS	Dnd41	blood
2	chr6:27857000-27863400	Active TSS	Thymus	Thymus
3	chr6:27857000-27863800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:27857200-27863800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:27857200-27864000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:27857200-27864000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:27857200-27864000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:27857400-27858600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:27857400-27858600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:27857400-27858600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:27857400-27858600	Flanking Active TSS	Fetal Thymus	thymus
12	chr6:27857400-27859200	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:27857400-27859200	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr6:27857400-27860000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:27857400-27864000	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:27857400-27864400	Active TSS	H1 Cell Line	embryonic stem cell
17	chr6:27857400-27864400	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:27857600-27858600	Flanking Active TSS	Fetal Muscle Leg	muscle
19	chr6:27857600-27858600	Flanking Active TSS	HMEC	breast
20	chr6:27857600-27858600	Flanking Active TSS	HUVEC	blood vessel
21	chr6:27857600-27859600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr6:27857600-27861000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:27857600-27864000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:27857800-27858600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:27857800-27858600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr6:27857800-27858600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr6:27857800-27858600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:27857800-27858600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:27857800-27858600	Enhancers	HepG2	liver
30	chr6:27857800-27858600	Flanking Active TSS	NHEK	skin
31	chr6:27857800-27861000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:27857800-27863600	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr6:27857800-27863800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:27857800-27864000	Active TSS	A549	lung
35	chr6:27858000-27858600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:27858000-27858600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
37	chr6:27858000-27858600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
38	chr6:27858000-27858600	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
39	chr6:27858000-27858600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
40	chr6:27858000-27858600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
41	chr6:27858000-27858600	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
42	chr6:27858000-27858600	Flanking Active TSS	Colonic Mucosa	Colon
43	chr6:27858000-27858600	Enhancers	Pancreas	Pancrea
44	chr6:27858000-27858600	Flanking Active TSS	Right Ventricle	heart
45	chr6:27858000-27858600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
46	chr6:27858000-27858600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
47	chr6:27858000-27858800	Transcr. at gene 5' and 3'	Right Atrium	heart
48	chr6:27858000-27858800	Active TSS	HSMMtube	muscle
49	chr6:27858000-27859000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:27858000-27859000	Flanking Active TSS	Primary B cells from peripheral blood	blood

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