Variant report

Variant	rs938134
Chromosome Location	chr18:44751374-44751375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11082567	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1434529	0.82[EUR][1000 genomes]
rs1512236	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1512238	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1836259	0.82[EUR][1000 genomes]
rs2571005	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2576052	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2668771	0.81[EUR][1000 genomes]
rs2668772	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2668776	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2668777	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2684833	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2684853	0.81[AMR][1000 genomes]
rs8091902	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs938134	HDHD2	cis	Muscle Skeletal	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links