Variant report

Variant	rs1836259
Chromosome Location	chr18:44732389-44732390
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:44730253..44733092-chr18:44744963..44746817,2	K562	blood:
2	chr18:44625997..44627852-chr18:44731582..44733974,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12953864	0.86[CHB][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12968552	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13381713	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1434529	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1512238	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16954921	0.96[CEU][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16954999	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2289133	1.00[CEU][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes]
rs2317324	0.92[CEU][hapmap]
rs2571002	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2571004	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2571005	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs2571006	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2571007	0.82[EUR][1000 genomes]
rs2571008	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2571010	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2571014	0.89[CEU][hapmap]
rs2571017	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2576052	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2576057	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2576058	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2635051	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2635052	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2635054	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2635056	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2668758	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2668759	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2668761	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2668762	0.81[EUR][1000 genomes]
rs2668763	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2668784	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2684819	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2684833	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs28718304	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55730206	0.85[EUR][1000 genomes]
rs7239323	0.83[EUR][1000 genomes]
rs8085634	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs938134	0.82[EUR][1000 genomes]
rs9953157	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9956809	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9961383	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[YRI][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44729800-44736600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:44730600-44732600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr18:44731400-44732600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:44731400-44733600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr18:44732000-44733200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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