Variant report

Variant	rs9953157
Chromosome Location	chr18:44705338-44705339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:44676158..44678571-chr18:44705279..44707685,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167220	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12953864	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12968552	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13381713	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1434529	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1512238	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16954921	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16954999	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1836259	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2289133	0.85[EUR][1000 genomes]
rs2571002	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2571004	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2571005	0.89[EUR][1000 genomes]
rs2571006	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2571007	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2571008	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2571010	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2571017	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2576052	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2576057	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2576058	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2635051	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2635052	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2635054	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2635056	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2668758	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2668759	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2668761	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2668762	0.82[EUR][1000 genomes]
rs2668763	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2668784	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2684819	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2684833	0.89[EUR][1000 genomes]
rs2684851	0.81[AMR][1000 genomes]
rs28718304	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55730206	0.85[EUR][1000 genomes]
rs7239323	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8085634	0.83[EUR][1000 genomes]
rs9956809	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9961383	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9629	chr18:44264693-44757511	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv833640	chr18:44552276-44714872	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv3412252	chr18:44684003-44711534	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44702800-44706200	Weak transcription	Lung	lung
2	chr18:44703000-44705600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr18:44703000-44705600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr18:44703000-44705600	Weak transcription	Fetal Stomach	stomach
5	chr18:44703000-44706000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr18:44703200-44705600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr18:44705000-44706800	Enhancers	Brain Germinal Matrix	brain

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