Variant report

Variant	rs9382141
Chromosome Location	chr6:13487231-13487232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr6:13484535-13488686	SK-N-SH	brain:	n/a	n/a
2	YY1	chr6:13486819-13488072	K562	blood:	n/a	chr6:13487772-13487794 chr6:13487730-13487741 chr6:13487730-13487744 chr6:13487772-13487782 chr6:13487793-13487807
3	POLR2A	chr6:13486907-13488187	GM18526	blood:	n/a	n/a
4	MAX	chr6:13486768-13488070	A549	lung:	n/a	chr6:13487342-13487351
5	MXI1	chr6:13486961-13487914	HepG2	liver:	n/a	n/a
6	POLR2A	chr6:13485907-13488270	GM18951	blood:	n/a	n/a
7	E2F4	chr6:13486864-13488140	K562	blood:	n/a	chr6:13487750-13487760
8	POLR2A	chr6:13485921-13488226	GM12892	blood:	n/a	n/a
9	POLR2A	chr6:13486837-13488588	HUVEC	blood vessel:	n/a	n/a
10	MAX	chr6:13486246-13487267	HUVEC	blood vessel:	n/a	chr6:13486482-13486492
11	TAF1	chr6:13486897-13488362	ECC-1	luminal epithelium:	n/a	n/a
12	MYC	chr6:13486067-13488139	NB4	blood:	n/a	chr6:13487342-13487351 chr6:13486482-13486492
13	SIN3A	chr6:13485974-13487504	GM12878	blood:	n/a	chr6:13487441-13487454
14	MAX	chr6:13486184-13488812	GM12878	blood:	n/a	chr6:13487342-13487351 chr6:13486482-13486492
15	POLR2A	chr6:13486803-13487949	GM12878	blood:	n/a	n/a
16	HEY1	chr6:13486915-13487244	K562	blood:	n/a	n/a
17	POLR2A	chr6:13487216-13487232	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr6:13487059-13487296	Hela-S3	cervix:	n/a	n/a
19	MYC	chr6:13486170-13488139	K562	blood:	n/a	chr6:13487342-13487351 chr6:13486482-13486492
20	POLR2A	chr6:13486331-13488405	H1-hESC	embryonic stem cell:	n/a	n/a
21	YY1	chr6:13486893-13487326	ECC-1	luminal epithelium:	n/a	n/a
22	YY1	chr6:13486909-13488031	GM12878	blood:	n/a	chr6:13487772-13487794 chr6:13487730-13487741 chr6:13487730-13487744 chr6:13487772-13487782 chr6:13487793-13487807
23	CTCF	chr6:13487180-13487330	GM12865	blood:	n/a	n/a
24	RFX5	chr6:13487068-13487383	Hela-S3	cervix:	n/a	n/a
25	MXI1	chr6:13486134-13487276	H1-hESC	embryonic stem cell:	n/a	n/a
26	SMC3	chr6:13485901-13488192	Hela-S3	cervix:	n/a	n/a
27	MAX	chr6:13486122-13489098	ECC-1	luminal epithelium:	n/a	chr6:13487342-13487351 chr6:13486482-13486492
28	MYC	chr6:13486839-13487408	MCF-7	breast:	n/a	chr6:13487342-13487351
29	MYC	chr6:13486169-13487984	K562	blood:	n/a	chr6:13487342-13487351 chr6:13486482-13486492
30	MAX	chr6:13486152-13488018	Hela-S3	cervix:	n/a	chr6:13487342-13487351 chr6:13486482-13486492
31	NFYB	chr6:13487179-13487378	GM12878	blood:	n/a	n/a
32	MAX	chr6:13486875-13487470	K562	blood:	n/a	chr6:13487342-13487351
33	YY1	chr6:13486932-13488073	K562	blood:	n/a	chr6:13487772-13487794 chr6:13487730-13487741 chr6:13487730-13487744 chr6:13487772-13487782 chr6:13487793-13487807
34	RCOR1	chr6:13487180-13487363	GM12878	blood:	n/a	n/a
35	MAX	chr6:13485823-13488217	K562	blood:	n/a	chr6:13487342-13487351 chr6:13486482-13486492
36	REST	chr6:13487041-13487500	ECC-1	luminal epithelium:	n/a	n/a
37	MYC	chr6:13486048-13487263	MCF10A-Er-Src	breast:	n/a	chr6:13486482-13486492
38	UBTF	chr6:13486612-13487994	K562	blood:	n/a	n/a
39	MAX	chr6:13486151-13488394	HCT-116	colon:	n/a	chr6:13487342-13487351 chr6:13486482-13486492
40	MAX	chr6:13486166-13487307	SK-N-SH	brain:	n/a	chr6:13486482-13486492
41	ZBTB7A	chr6:13487171-13487595	K562	blood:	n/a	n/a
42	HEY1	chr6:13486831-13487292	K562	blood:	n/a	n/a
43	TBP	chr6:13486976-13488156	K562	blood:	n/a	n/a
44	MAX	chr6:13486178-13489004	ECC-1	luminal epithelium:	n/a	chr6:13487342-13487351 chr6:13486482-13486492
45	E2F6	chr6:13486886-13488080	K562	blood:	n/a	chr6:13487750-13487760
46	POLR2A	chr6:13486964-13488193	K562	blood:	n/a	n/a
47	YY1	chr6:13486885-13487233	SK-N-SH_RA	brain:	n/a	n/a
48	CBX3	chr6:13486781-13487276	K562	blood:	n/a	n/a
49	SIN3AK20	chr6:13486833-13487647	K562	blood:	n/a	n/a
50	MAX	chr6:13486136-13487354	MCF-7	breast:	n/a	chr6:13487342-13487351 chr6:13486482-13486492

No.	Distal block	Cell Line	Cell type
1	chr6:13328740..13330326-chr6:13487032..13488615,2	K562	blood:
2	chr6:13273285..13276286-chr6:13486162..13489029,3	K562	blood:
3	chr6:13408139..13410381-chr6:13486541..13489029,3	MCF-7	breast:
4	chr6:13273285..13276286-chr6:13486162..13489029,4	K562	blood:
5	chr6:13484664..13490672-chr6:13572714..13577234,9	K562	blood:
6	chr6:13484393..13490113-chr6:13572102..13578017,14	MCF-7	breast:
7	chr6:13465251..13472690-chr6:13481619..13489131,10	K562	blood:
8	chr6:13326316..13328538-chr6:13485562..13488530,2	MCF-7	breast:
9	chr6:13471062..13472931-chr6:13486374..13489089,2	MCF-7	breast:
10	chr6:13486147..13488786-chr6:13613803..13616517,3	K562	blood:
11	chr6:13485388..13489511-chr6:13572660..13577514,13	MCF-7	breast:
12	chr6:13325999..13330365-chr6:13484429..13488653,6	MCF-7	breast:
13	chr6:13486545..13489203-chr6:13612282..13616748,6	MCF-7	breast:
14	chr6:13406818..13408886-chr6:13483840..13488220,5	MCF-7	breast:
15	chr6:13484642..13487748-chr6:13572714..13576594,3	K562	blood:
16	chr6:13486736..13489619-chr6:13614070..13616875,2	MCF-7	breast:

Variant related genes	Relation type
GFOD1	TF binding region
ENSG00000187461	TF binding region
ENSG00000145990	Chromatin interaction
ENSG00000215022	Chromatin interaction
ENSG00000124523	Chromatin interaction
ENSG00000261071	Chromatin interaction
ENSG00000225921	Chromatin interaction
ENSG00000145979	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2059804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382144	0.90[AFR][1000 genomes]
rs9395813	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3421701	chr6:13485573-13489871	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	esv3363743	chr6:13486598-13489146	Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13483200-13488800	Active TSS	Right Atrium	heart
2	chr6:13483400-13487600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:13484200-13488600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:13484600-13488400	Active TSS	GM12878-XiMat	blood
5	chr6:13484800-13488400	Active TSS	Right Ventricle	heart
6	chr6:13485000-13488800	Active TSS	Brain Angular Gyrus	brain
7	chr6:13485000-13489600	Active TSS	Rectal Smooth Muscle	rectum
8	chr6:13485200-13488200	Active TSS	Stomach Smooth Muscle	stomach
9	chr6:13485200-13488200	Active TSS	NHLF	lung
10	chr6:13485200-13488600	Active TSS	Left Ventricle	heart
11	chr6:13485200-13488600	Active TSS	A549	lung
12	chr6:13485200-13488800	Active TSS	Brain Anterior Caudate	brain
13	chr6:13485200-13488800	Active TSS	Psoas Muscle	Psoas
14	chr6:13485400-13487600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr6:13485400-13488600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:13485400-13488600	Active TSS	NHDF-Ad	bronchial
17	chr6:13485600-13488200	Active TSS	Placenta Amnion	Placenta Amnion
18	chr6:13485600-13488200	Active TSS	HSMMtube	muscle
19	chr6:13485600-13488600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr6:13485600-13488600	Active TSS	Esophagus	oesophagus
21	chr6:13485600-13488600	Active TSS	Lung	lung
22	chr6:13485600-13488800	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr6:13485600-13488800	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr6:13485600-13489000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:13485800-13487400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr6:13485800-13487400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
27	chr6:13485800-13488600	Active TSS	Ovary	ovary
28	chr6:13486000-13487400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chr6:13486000-13487400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
30	chr6:13486000-13487600	Active TSS	Fetal Heart	heart
31	chr6:13486000-13488200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:13486000-13488200	Active TSS	Spleen	Spleen
33	chr6:13486000-13488200	Active TSS	Hela-S3	cervix
34	chr6:13486000-13488200	Active TSS	HMEC	breast
35	chr6:13486000-13488200	Active TSS	K562	blood
36	chr6:13486000-13488400	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr6:13486000-13488600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:13486000-13488600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:13486000-13488800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
40	chr6:13486000-13488800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
41	chr6:13486000-13488800	Active TSS	Aorta	Aorta
42	chr6:13486000-13488800	Active TSS	Brain Inferior Temporal Lobe	brain
43	chr6:13486000-13489000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
44	chr6:13486000-13489000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
45	chr6:13486000-13489000	Active TSS	Fetal Brain Female	brain
46	chr6:13486000-13489000	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr6:13486000-13489200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:13486200-13488000	Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr6:13486200-13488000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
50	chr6:13486200-13488000	Active TSS	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links