Variant report

Variant	rs9382144
Chromosome Location	chr6:13490647-13490648
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000145990	Chromatin interaction
ENSG00000124523	Chromatin interaction
ENSG00000237786	Chromatin interaction
ENSG00000187461	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11759779	0.92[ASN][1000 genomes]
rs2059804	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2115063	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2560761	0.84[CHB][hapmap]
rs2560789	0.85[CEU][hapmap]
rs2560790	0.85[CEU][hapmap]
rs2841548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2841549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715379	0.85[CEU][hapmap]
rs6458872	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458898	0.85[CEU][hapmap]
rs7758810	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367502	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9370156	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382141	0.90[AFR][1000 genomes]
rs9382154	0.92[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382156	0.81[EUR][1000 genomes]
rs9395813	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13488400-13494400	Weak transcription	HSMMtube	muscle
2	chr6:13489000-13490800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:13489000-13494200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:13489200-13496600	Weak transcription	Spleen	Spleen
5	chr6:13489200-13496600	Weak transcription	GM12878-XiMat	blood
6	chr6:13489400-13493800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:13489400-13494000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:13489400-13494200	Weak transcription	Fetal Heart	heart
9	chr6:13489400-13495600	Weak transcription	Left Ventricle	heart
10	chr6:13489600-13491600	Weak transcription	Esophagus	oesophagus
11	chr6:13489600-13493800	Weak transcription	Right Atrium	heart
12	chr6:13489600-13495600	Weak transcription	Right Ventricle	heart
13	chr6:13490600-13490800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:13490600-13490800	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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